myRT

myRT report for GCA_001526735.1_ASM152673v1

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Seq: LPAL01000100.1 Burkholderia ubonensis strain MSMB1601WGS MSMB1601WGS_69, whole genome shotgun sequence (199771 bp)
Overview 1 RT 1: 51509-56696 bp Neighborhood of RT #1 [51509, 56698] Cupin_6 AraC VOC RVT-Retrons DUF3141 PRK12829 Rve Feature: gene Location: 51509-52336 bp Ori: KVO33407.1 Feature: domain Description: Cupin_6 Location: 51518-51977 bp Feature: domain Description: Cupin_6 Location: 51 51 8-51 977 bp Feature: domain Description: AraC Location: 51986-52325 bp Feature: domain Description: AraC Location: 51 986-52325 bp Feature: gene Location: 52775-53161 bp Ori: KVO33408.1 Feature: domain Description: VOC Location: 52790-53111 bp Feature: domain Description: VOC Location: 52790-531 1 1 bp Feature: gene Location: 53464-54813 bp Ori: KVO33409.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 53929-54565 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 53929-54565 bp Feature: gene Location: 55116-56009 bp Ori: KVO33410.1 Feature: domain Description: DUF3141 Location: 55188-55860 bp Feature: domain Description: DUF31 41 Location: 551 88-55860 bp Feature: domain Description: PRK12829 Location: 55863-55998 bp Feature: domain Description: PRK1 2829 Location: 55863-55998 bp Feature: gene Location: 56540-56698 bp Ori: KVO33411.1 Feature: domain Description: Rve Location: 56567-56696 bp Feature: domain Description: Rve Location: 56567-56696 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cupin_6 (pfam12852), AraC (COG2207), VOC (cl14632), RVT-Retrons, DUF3141 (pfam11339), PRK12829 (short chain dehydrogenase; Provisional), Rve (COG3316)

Seq: LPAL01000058.1 Burkholderia ubonensis strain MSMB1601WGS MSMB1601WGS_30, whole genome shotgun sequence (81183 bp)
Overview 1 RT 1: 63697-69407 bp Neighborhood of RT #1 [63697, 74164] SLATT_5 RVT-UG17 ComEC ComEC Trypsin_2 pfam13191 Feature: gene Location: 63697-64410 bp Feature: gene Location: 64701-65333 bp Ori: KVO39266.1 Feature: domain Description: SLATT_5 Location: 64746-65313 bp Feature: domain Description: SLATT_5 Location: 64746-65313 bp Feature: gene Location: 65330-66730 bp Ori: KVO39267.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 65567-66164 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 65567-66164 bp Feature: gene Location: 67170-68342 bp Ori: KVO39268.1 Feature: domain Description: ComEC Location: 67206-67392 bp Feature: domain Description: ComEC Location: 672 06-67392 bp Feature: domain Description: ComEC Location: 67932-68205 bp Feature: domain Description: ComEC Location: 67932 -682 05 bp Feature: gene Location: 68354-74164 bp Ori: KVO39269.1 Feature: domain Description: Trypsin_2 Location: 68414-68828 bp Feature: domain Description: Trypsin_2 Location: 68414-6882 8 bp Feature: domain Description: pfam13191 Location: 68990-69407 bp Feature: domain Description: pfam13191 Location: 68990-69407 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, ComEC (COG2333), Trypsin_2 (pfam13365), pfam13191 (AAA_16;AAA ATPase domain)

Seq: LPAL01000086.1 Burkholderia ubonensis strain MSMB1601WGS MSMB1601WGS_56, whole genome shotgun sequence (16326 bp)
Overview 1 RT 1: 1-1688 bp Neighborhood of RT #1 [1, 1831] RVT-GII REC CheX Feature: gene Location: 1-426 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40-292 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40-292 bp Feature: gene Location: 464-829 bp Ori: KVO34730.1 Feature: domain Description: REC Location: 479-821 bp Feature: domain Description: REC Location: 479-821 bp Feature: gene Location: 872-1831 bp Ori: KVO34731.1 Feature: domain Description: CheX Location: 1388-1688 bp Feature: domain Description: CheX Location: 13 88-1688 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, REC (smart00448), CheX (pfam13690)

Seq: LPAL01000126.1 Burkholderia ubonensis strain MSMB1601WGS MSMB1601WGS_92, whole genome shotgun sequence (429504 bp)
Overview 1 RT 1: 13479-19512 bp Neighborhood of RT #1 [13479, 19565] PRK05255 PRK11040 RVT-GII GIIM DHFR_1 AtoC Feature: gene Location: 13479-14090 bp Ori: KVO29263.1 Feature: domain Description: PRK05255 Location: 13530-14022 bp Feature: domain Description: PRK05255 Location: 13530-14 022 bp Feature: gene Location: 14234-15604 bp Ori: KVO29602.1 Gene: pmbA Feature: domain Description: PRK11040 Location: 14285-15602 bp Feature: domain Description: PRK1104 0 Location: 14 285-15602 bp Feature: gene Location: 16093-17457 bp Ori: KVO29264.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16426-17041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 164 26-1704 1 bp Feature: domain Description: GIIM Note: maturase Location: 17098-17314 bp Feature: domain Description: GIIM Note: maturase Location: 17098-17314 bp Feature: gene Location: 17552-18052 bp Ori: KVO29265.1 Feature: domain Description: DHFR_1 Location: 17564-18041 bp Feature: domain Description: DHFR_1 Location: 17564 -1804 1 bp Feature: gene Location: 18147-19565 bp Ori: KVO29603.1 Feature: domain Description: AtoC Location: 18237-19512 bp Feature: domain Description: AtoC Location: 18237-19512 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05255 (ribosome-associated protein), PRK11040 (peptidase PmbA; Provisional), RVT-GII, GIIM (pfam08388), DHFR_1 (pfam00186), AtoC (COG2204)