myRT

myRT report for GCA_001526945.1_ASM152694v1

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Seq: LPAY01000118.1 Burkholderia ubonensis strain MSMB1791WGS MSMB1791WGS_52, whole genome shotgun sequence (248586 bp)
Overview 1 RT 1: 41980-47167 bp Neighborhood of RT #1 [41980, 47169] Cupin_6 AraC VOC RVT-Retrons DUF3141 PRK12829 Rve Feature: gene Location: 41980-42807 bp Ori: KVP19261.1 Feature: domain Description: Cupin_6 Location: 41989-42448 bp Feature: domain Description: Cupin_6 Location: 41 989-42448 bp Feature: domain Description: AraC Location: 42457-42796 bp Feature: domain Description: AraC Location: 42457-42796 bp Feature: gene Location: 43246-43632 bp Ori: KVP19262.1 Feature: domain Description: VOC Location: 43261-43582 bp Feature: domain Description: VOC Location: 43261 -43582 bp Feature: gene Location: 43935-45284 bp Ori: KVP19263.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 44400-45036 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 44400-45036 bp Feature: gene Location: 45587-46480 bp Ori: KVP19264.1 Feature: domain Description: DUF3141 Location: 45659-46331 bp Feature: domain Description: DUF31 41 Location: 45659-46331 bp Feature: domain Description: PRK12829 Location: 46334-46469 bp Feature: domain Description: PRK1 2829 Location: 46334-46469 bp Feature: gene Location: 47011-47169 bp Ori: KVP19265.1 Feature: domain Description: Rve Location: 47038-47167 bp Feature: domain Description: Rve Location: 47038-471 67 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cupin_6 (pfam12852), AraC (COG2207), VOC (cl14632), RVT-Retrons, DUF3141 (pfam11339), PRK12829 (short chain dehydrogenase; Provisional), Rve (COG3316)

Seq: LPAY01000037.1 Burkholderia ubonensis strain MSMB1791WGS MSMB1791WGS_132, whole genome shotgun sequence (94040 bp)
Overview 1 RT 1: 76545-82255 bp Neighborhood of RT #1 [76545, 87012] SLATT_5 RVT-UG17 ComEC ComEC Trypsin_2 pfam13191 Feature: gene Location: 76545-77258 bp Feature: gene Location: 77549-78181 bp Ori: KVP30231.1 Feature: domain Description: SLATT_5 Location: 77594-78161 bp Feature: domain Description: SLATT_5 Location: 77594-78161 bp Feature: gene Location: 78178-79578 bp Ori: KVP30232.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 78415-79012 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 78415-79012 bp Feature: gene Location: 80018-81190 bp Ori: KVP30233.1 Feature: domain Description: ComEC Location: 80054-80240 bp Feature: domain Description: ComEC Location: 80054-802 40 bp Feature: domain Description: ComEC Location: 80780-81053 bp Feature: domain Description: ComEC Location: 80780-81053 bp Feature: gene Location: 81202-87012 bp Ori: KVP30234.1 Feature: domain Description: Trypsin_2 Location: 81262-81676 bp Feature: domain Description: Trypsin_2 Location: 812 62 -81676 bp Feature: domain Description: pfam13191 Location: 81838-82255 bp Feature: domain Description: pfam13191 Location: 81838-82 2 55 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, ComEC (COG2333), Trypsin_2 (pfam13365), pfam13191 (AAA_16;AAA ATPase domain)

Seq: LPAY01000079.1 Burkholderia ubonensis strain MSMB1791WGS MSMB1791WGS_170, whole genome shotgun sequence (37212 bp)
Overview 1 RT 1: 13479-19512 bp Neighborhood of RT #1 [13479, 19565] PRK05255 PRK11040 RVT-GII GIIM DHFR_1 AtoC Feature: gene Location: 13479-14090 bp Ori: KVP25149.1 Feature: domain Description: PRK05255 Location: 13530-14022 bp Feature: domain Description: PRK05255 Location: 13 53 0-14022 bp Feature: gene Location: 14234-15604 bp Ori: KVP25168.1 Gene: pmbA Feature: domain Description: PRK11040 Location: 14285-15602 bp Feature: domain Description: PRK11040 Location: 14285-15602 bp Feature: gene Location: 16093-17457 bp Ori: KVP25150.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16426-17041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16426-17041 bp Feature: domain Description: GIIM Note: maturase Location: 17098-17314 bp Feature: domain Description: GIIM Note: maturase Location: 17098-173 14 bp Feature: gene Location: 17552-18052 bp Ori: KVP25151.1 Feature: domain Description: DHFR_1 Location: 17564-18041 bp Feature: domain Description: DHFR_1 Location: 17564-18041 bp Feature: gene Location: 18147-19565 bp Ori: KVP25169.1 Feature: domain Description: AtoC Location: 18237-19512 bp Feature: domain Description: AtoC Location: 1823 7-19512 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05255 (ribosome-associated protein), PRK11040 (peptidase PmbA; Provisional), RVT-GII, GIIM (pfam08388), DHFR_1 (pfam00186), AtoC (COG2204)

Seq: LPAY01000124.1 Burkholderia ubonensis strain MSMB1791WGS MSMB1791WGS_58, whole genome shotgun sequence (16326 bp)
Overview 1 RT 1: 1-1688 bp Neighborhood of RT #1 [1, 1831] RVT-GII REC CheX Feature: gene Location: 1-426 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40-292 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 0-292 bp Feature: gene Location: 464-829 bp Ori: KVP18607.1 Feature: domain Description: REC Location: 479-821 bp Feature: domain Description: REC Location: 4 79-821 bp Feature: gene Location: 872-1831 bp Ori: KVP18608.1 Feature: domain Description: CheX Location: 1388-1688 bp Feature: domain Description: CheX Location: 1388-1688 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, REC (smart00448), CheX (pfam13690)