myRT

myRT report for GCA_001527225.1_ASM152722v1

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Seq: LOYV01000143.1 Burkholderia ubonensis strain MSMB2047 MSMB2047_99, whole genome shotgun sequence (34375 bp)
Overview 1 RT 1: 1009-7031 bp Neighborhood of RT #1 [1009, 7042] DUF3141 RVT-Retrons VOC AraC Feature: gene Location: 1009-1221 bp Feature: gene Location: 1231-3489 bp Ori: KVL59449.1 Feature: domain Description: DUF3141 Location: 1357-3088 bp Feature: domain Description: DUF31 41 Location: 1 357-3088 bp Feature: gene Location: 3738-5087 bp Ori: KVL59450.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4203-4839 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4203-4839 bp Feature: gene Location: 5390-5776 bp Ori: KVL59451.1 Feature: domain Description: VOC Location: 5405-5726 bp Feature: domain Description: VOC Location: 5405-5726 bp Feature: gene Location: 6215-7042 bp Ori: KVL59452.1 Feature: domain Description: AraC Location: 6677-7031 bp Feature: domain Description: AraC Location: 6677-7031 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3141 (pfam11339), RVT-Retrons, VOC (cl14632), AraC (COG2207)

Seq: LOYV01000034.1 Burkholderia ubonensis strain MSMB2047 MSMB2047_13, whole genome shotgun sequence (662 bp)
Overview 1 RT 1: 9-519 bp Neighborhood of RT #1 [9, 662] RVT-GII GIIM Feature: gene Location: 9-662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12-246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 -2 46 bp Feature: domain Description: GIIM Note: maturase Location: 303-519 bp Feature: domain Description: GIIM Note: maturase Location: 303-519 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LOYV01000130.1 Burkholderia ubonensis strain MSMB2047 MSMB2047_87, whole genome shotgun sequence (89414 bp)
Overview 1 RT 1: 56025-63243 bp Neighborhood of RT #1 [56025, 63278] gltS HTH_33 DDE_3 RVT-GII LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C TnpB_IS66 Feature: gene Location: 56025-57248 bp Ori: KVL61858.1 Feature: domain Description: gltS Location: 56031-57237 bp Feature: domain Description: gltS Location: 5603 1-5723 7 bp Feature: gene Location: 57682-58335 bp Ori: KVL61859.1 Feature: domain Description: HTH_33 Location: 57709-57877 bp Feature: domain Description: HTH_3 3 Location: 57709-57877 bp Feature: domain Description: DDE_3 Location: 57922-58321 bp Feature: domain Description: DDE_3 Location: 57922-583 21 bp Feature: gene Location: 58383-59672 bp Ori: KVL61860.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58587-59277 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58587-59277 bp Feature: gene Location: 61310-62893 bp Ori: KVL61861.1 Feature: domain Description: LZ_Tnp_IS66 Location: 61451-61664 bp Feature: domain Description: LZ_Tnp_IS66 Location: 61451-61664 bp Feature: domain Description: zf-IS66 Location: 61691-61823 bp Feature: domain Description: zf-IS66 Location: 61691-61823 bp Feature: domain Description: DDE_Tnp_IS66 Location: 61871-62738 bp Feature: domain Description: DDE_Tnp_IS66 Location: 61871-6273 8 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 62756-62870 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 62756-62870 bp Feature: gene Location: 62925-63278 bp Ori: KVL61862.1 Feature: domain Description: TnpB_IS66 Location: 62952-63243 bp Feature: domain Description: TnpB_IS66 Location: 62952-63 243 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT gltS (TIGR00210), HTH_33 (pfam13592), DDE_3 (pfam13358), RVT-GII, LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), TnpB_IS66 (pfam05717)