myRT

myRT report for GCA_001527505.1_ASM152750v1

Download annotations/find similar RTs

Seq: LOZL01000153.1 Burkholderia ubonensis strain MSMB1757 MSMB1757_98, whole genome shotgun sequence (18623 bp)
Overview 1 RT 1: 1059-4219 bp Neighborhood of RT #1 [1059, 4362] COG3517 RVT-GII REC CheX Feature: gene Location: 1059-1442 bp Feature: gene Location: 1704-2291 bp Feature: domain Description: COG3517 Location: 1764-2253 bp Feature: domain Description: COG351 7 Location: 1 764-2253 bp Feature: gene Location: 2487-2957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2523-2778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2523-2778 bp Feature: gene Location: 2995-3360 bp Feature: domain Description: REC Location: 3010-3352 bp Feature: domain Description: REC Location: 301 0-3352 bp Feature: gene Location: 3403-4362 bp Feature: domain Description: CheX Location: 3919-4219 bp Feature: domain Description: CheX Location: 391 9-421 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3517 (Predicted component of the type VI protein secretion system ), RVT-GII, REC (smart00448), CheX (pfam13690)

Seq: LOZL01000081.1 Burkholderia ubonensis strain MSMB1757 MSMB1757_32, whole genome shotgun sequence (48567 bp)
Overview 1 RT 1: 1-2846 bp Neighborhood of RT #1 [1, 2893] RVT-Retrons AcrR Feature: gene Location: 1-1005 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 145-724 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 145-72 4 bp Feature: gene Location: 1312-1569 bp Feature: gene Location: 2294-2893 bp Feature: domain Description: AcrR Location: 2309-2846 bp Feature: domain Description: AcrR Location: 2 309-2 846 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, AcrR (COG1309)

Seq: LOZL01000154.1 Burkholderia ubonensis strain MSMB1757 MSMB1757_99, whole genome shotgun sequence (29669 bp)
Overview 1 RT 1: 21989-25974 bp Neighborhood of RT #1 [21989, 25982] VapB_antitoxin PIN RVT-GII LysR Feature: gene Location: 21989-22195 bp Feature: domain Description: VapB_antitoxin Location: 21992-22118 bp Feature: domain Description: VapB_antitoxin Location: 21992-22118 bp Feature: gene Location: 22192-22575 bp Feature: domain Description: PIN Location: 22201-22537 bp Feature: domain Description: PIN Location: 22201-2253 7 bp Feature: gene Location: 22698-23729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22983-23619 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22983 -23 619 bp Feature: gene Location: 23943-24455 bp Feature: gene Location: 25092-25982 bp Feature: domain Description: LysR Location: 25095-25974 bp Feature: domain Description: LysR Location: 25095-25974 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VapB_antitoxin (pfam09957), PIN (pfam01850), RVT-GII, LysR (COG0583)

Seq: LOZL01000032.1 Burkholderia ubonensis strain MSMB1757 MSMB1757_128, whole genome shotgun sequence (137735 bp)
Overview 1 RT 1: 26824-35474 bp Neighborhood of RT #1 [26824, 35500] MATE_Wzx_like GT4_WbaZ-like Glyco_transf_4 GT4_WbaZ-like RVT-GII GIIM OafA GalU Feature: gene Location: 26824-28290 bp Feature: domain Description: MATE_Wzx_like Location: 26839-28066 bp Feature: domain Description: MATE_Wzx_like Location: 26839-28066 bp Feature: gene Location: 28287-30749 bp Feature: domain Description: GT4_WbaZ-like Location: 28425-29499 bp Feature: domain Description: GT4 _WbaZ-like Location: 284 25-294 99 bp Feature: domain Description: Glyco_transf_4 Location: 29631-30126 bp Feature: domain Description: Glyco_transf_4 Location: 29631-30126 bp Feature: domain Description: GT4_WbaZ-like Location: 30216-30627 bp Feature: domain Description: GT4 _WbaZ-like Location: 30216-30627 bp Feature: gene Location: 31264-32628 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31597-32212 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31597-32212 bp Feature: domain Description: GIIM Note: maturase Location: 32269-32485 bp Feature: domain Description: GIIM Note: maturase Location: 32269-324 85 bp Feature: gene Location: 32840-34012 bp Feature: domain Description: OafA Location: 32900-34004 bp Feature: domain Description: OafA Location: 32900-34 004 bp Feature: gene Location: 34613-35500 bp Feature: domain Description: GalU Location: 34619-35474 bp Feature: domain Description: GalU Location: 34 619-354 74 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MATE_Wzx_like (cd13128), GT4_WbaZ-like (cd03804), Glyco_transf_4 (pfam13439), RVT-GII, GIIM (pfam08388), OafA (COG1835), GalU (COG1210)

Seq: LOZL01000095.1 Burkholderia ubonensis strain MSMB1757 MSMB1757_45, whole genome shotgun sequence (200316 bp)
Overview 1 RT 1: 7704-14432 bp Neighborhood of RT #1 [7704, 14443] PRK07533 DUF3141 RVT-Retrons VOC AraC Feature: gene Location: 7704-8483 bp Feature: domain Description: PRK07533 Location: 7722-8478 bp Feature: domain Description: PRK075 33 Location: 7722-8478 bp Feature: gene Location: 8672-10930 bp Feature: domain Description: DUF3141 Location: 8798-10529 bp Feature: domain Description: DUF3141 Location: 8798-105 29 bp Feature: gene Location: 11139-12488 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11604-12240 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11604-12240 bp Feature: gene Location: 12791-13177 bp Feature: domain Description: VOC Location: 12806-13127 bp Feature: domain Description: VOC Location: 12806-13127 bp Feature: gene Location: 13616-14443 bp Feature: domain Description: AraC Location: 14078-14432 bp Feature: domain Description: AraC Location: 14078-14432 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, VOC (cl14632), AraC (COG2207), PRK07533 (enoyl- reductase FabI), DUF3141 (pfam11339)