myRT

myRT report for GCA_001527745.1_ASM152774v1

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Seq: LOZW01000017.1 Burkholderia ubonensis strain MSMB1969 MSMB1969_114, whole genome shotgun sequence (10260 bp)
Overview 1 RT 1: 365-4041 bp Neighborhood of RT #1 [365, 4067] RVT-GII GIIM IS5 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C Feature: gene Location: 365-1435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 368-965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 368-965 bp Feature: domain Description: GIIM Note: maturase Location: 1016-1250 bp Feature: domain Description: GIIM Note: maturase Location: 1 01 6-1 250 bp Feature: gene Location: 1545-2048 bp Feature: domain Description: IS5 Location: 1551-2019 bp Feature: domain Description: IS5 Location: 1 551 -201 9 bp Feature: gene Location: 2502-4067 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2625-2838 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2625-2838 bp Feature: domain Description: zf-IS66 Location: 2862-2994 bp Feature: domain Description: zf-IS66 Location: 2862-2994 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3042-3909 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3042-3909 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3927-4041 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3927-4041 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388)

Seq: LOZW01000005.1 Burkholderia ubonensis strain MSMB1969 MSMB1969_103, whole genome shotgun sequence (5636 bp)
Overview 1 RT 1: 107-5560 bp Neighborhood of RT #1 [107, 5559] COG3547 RVT-GII zf-IS66 DDE_Tnp_IS66 IS285 Feature: gene Location: 107-1126 bp Feature: domain Description: COG3547 Location: 119-1073 bp Feature: domain Description: COG3547 Location: 119-1073 bp Feature: gene Location: 1292-2800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1718-2408 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1718-2 408 bp Feature: gene Location: 3215-4180 bp Feature: domain Description: zf-IS66 Location: 3218-3332 bp Feature: domain Description: zf-IS66 Location: 32 18-3332 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3374-4178 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3374-4178 bp Feature: gene Location: 4915-5559 bp Feature: domain Description: IS285 Location: 4999-5560 bp Feature: domain Description: IS2 85 Location: 4999-5560 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), IS285 (COG3328)

Seq: LOZW01000022.1 Burkholderia ubonensis strain MSMB1969 MSMB1969_119, whole genome shotgun sequence (27063 bp)
Overview 1 RT 1: 11557-15933 bp Neighborhood of RT #1 [11557, 15933] COG3905 ParE_toxin RVT-GII GIIM Feature: gene Location: 11557-11829 bp Feature: domain Description: COG3905 Location: 11560-11782 bp Feature: domain Description: COG3 905 Location: 11560-11782 bp Feature: gene Location: 11817-12107 bp Feature: domain Description: ParE_toxin Location: 11829-12099 bp Feature: domain Description: ParE_toxin Location: 11829-12099 bp Feature: gene Location: 13079-14485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13418-14033 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 418-1403 3 bp Feature: domain Description: GIIM Note: maturase Location: 14087-14306 bp Feature: domain Description: GIIM Note: maturase Location: 14087-143 06 bp Feature: gene Location: 14819-15595 bp Feature: gene Location: 15595-15933 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3905 (Predicted transcriptional regulator ), ParE_toxin (pfam05016), RVT-GII, GIIM (pfam08388)

Seq: LOZW01000038.1 Burkholderia ubonensis strain MSMB1969 MSMB1969_133, whole genome shotgun sequence (314423 bp)
Overview 1 RT 1: 307314-314191 bp Neighborhood of RT #1 [307314, 314196] Cupin_6 AraC VOC RVT-Retrons DUF3141 PRK07533 Feature: gene Location: 307314-308141 bp Feature: domain Description: Cupin_6 Location: 307323-307782 bp Feature: domain Description: Cupin_6 Location: 307323-307782 bp Feature: domain Description: AraC Location: 307791-308130 bp Feature: domain Description: AraC Location: 307791-308130 bp Feature: gene Location: 308580-308966 bp Feature: domain Description: VOC Location: 308595-308916 bp Feature: domain Description: VOC Location: 308595-308916 bp Feature: gene Location: 309269-310618 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 309734-310370 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 309734 -310370 bp Feature: gene Location: 310868-313126 bp Feature: domain Description: DUF3141 Location: 310994-312725 bp Feature: domain Description: DUF314 1 Location: 310994 -312725 bp Feature: gene Location: 313417-314196 bp Feature: domain Description: PRK07533 Location: 313435-314191 bp Feature: domain Description: PRK07533 Location: 3134 35-314 191 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cupin_6 (pfam12852), AraC (COG2207), VOC (cl14632), RVT-Retrons, DUF3141 (pfam11339), PRK07533 (enoyl- reductase FabI)