myRT

myRT report for GCA_001527925.1_ASM152792v1

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Seq: LPAH01000050.1 Burkholderia ubonensis strain MSMB1596WGS MSMB1596WGS_20, whole genome shotgun sequence (34837 bp)
Overview 1 RT 1: 12407-17642 bp Neighborhood of RT #1 [12407, 17647] Histone_HNS RVT-GII GIIM PRK10809 TonB_C Feature: gene Location: 12407-12733 bp Feature: domain Description: Histone_HNS Location: 12434-12668 bp Feature: domain Description: Histone_HNS Location: 1 2434-1 2668 bp Feature: gene Location: 13220-13546 bp Feature: gene Location: 14132-15538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14471-15086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4471 -1 5086 bp Feature: domain Description: GIIM Note: maturase Location: 15140-15359 bp Feature: domain Description: GIIM Note: maturase Location: 1 51 40-1 5359 bp Feature: gene Location: 15745-16317 bp Feature: domain Description: PRK10809 Location: 15781-16306 bp Feature: domain Description: PRK1 0809 Location: 1 5781 -1 6306 bp Feature: gene Location: 16940-17647 bp Feature: domain Description: TonB_C Location: 17432-17642 bp Feature: domain Description: TonB_C Location: 1 7432-1 7642 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-GII, GIIM (pfam08388), PRK10809 (30S ribosomal protein S5 alanine N-acetyltransferase), TonB_C (pfam03544)

Seq: LPAH01000010.1 Burkholderia ubonensis strain MSMB1596WGS MSMB1596WGS_108, whole genome shotgun sequence (1853 bp)
Overview 1 RT 1: 87-1308 bp Neighborhood of RT #1 [87, 1451] RVT-GII GIIM Feature: gene Location: 87-1451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 420-1035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 0-1035 bp Feature: domain Description: GIIM Note: maturase Location: 1092-1308 bp Feature: domain Description: GIIM Note: maturase Location: 1092 -1308 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LPAH01000013.1 Burkholderia ubonensis strain MSMB1596WGS MSMB1596WGS_110, whole genome shotgun sequence (218588 bp)
Overview 1 RT 1: 33651-40441 bp Neighborhood of RT #1 [33651, 40452] PRK07533 DUF3141 RVT-Retrons VOC Cupin_6 AraC Feature: gene Location: 33651-34430 bp Feature: domain Description: PRK07533 Location: 33669-34425 bp Feature: domain Description: PRK0753 3 Location: 3 3 669-3 4425 bp Feature: gene Location: 34593-36899 bp Feature: domain Description: DUF3141 Location: 34719-36474 bp Feature: domain Description: DUF3 141 Location: 3 4719-3 6474 bp Feature: gene Location: 37148-38497 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37613-38249 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 7613 -3 8249 bp Feature: gene Location: 38800-39186 bp Feature: domain Description: VOC Location: 38815-39136 bp Feature: domain Description: VOC Location: 3 8815-3 913 6 bp Feature: gene Location: 39625-40452 bp Feature: domain Description: Cupin_6 Location: 39634-40093 bp Feature: domain Description: Cupin_6 Location: 3 963 4-40093 bp Feature: domain Description: AraC Location: 40102-40441 bp Feature: domain Description: AraC Location: 40102-40441 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK07533 (enoyl- reductase FabI), DUF3141 (pfam11339), RVT-Retrons, VOC (cl14632), Cupin_6 (pfam12852), AraC (COG2207)

Seq: LPAH01000102.1 Burkholderia ubonensis strain MSMB1596WGS MSMB1596WGS_68, whole genome shotgun sequence (16370 bp)
Overview 1 RT 1: 14507-16203 bp Neighborhood of RT #1 [14507, 16370] CheX REC RVT-GII Feature: gene Location: 14507-15466 bp Feature: domain Description: CheX Location: 15023-15323 bp Feature: domain Description: CheX Location: 15023-15323 bp Feature: gene Location: 15509-15874 bp Feature: domain Description: REC Location: 15524-15866 bp Feature: domain Description: REC Location: 15524 -15866 bp Feature: gene Location: 15933-16370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15948-16203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1594 8-16203 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CheX (pfam13690), REC (smart00448), RVT-GII