myRT

myRT report for GCA_001527945.1_ASM152794v1

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Seq: LPAI01000116.1 Burkholderia ubonensis strain MSMB1598WGS MSMB1598WGS_84, whole genome shotgun sequence (326243 bp)
Overview 1 RT 1: 298001-301644 bp Neighborhood of RT #1 [298001, 301644] Avd_like RVT-DGRs Feature: gene Location: 298001-298465 bp Feature: gene Location: 298480-298857 bp Feature: domain Description: Avd_like Location: 298507-298813 bp Feature: domain Description: Avd_like Location: 298507-29881 3 bp Feature: gene Location: 299210-300187 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 299282-300044 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 299282-300044 bp Feature: gene Location: 300198-300746 bp Feature: gene Location: 301462-301644 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs

Seq: LPAI01000016.1 Burkholderia ubonensis strain MSMB1598WGS MSMB1598WGS_113, whole genome shotgun sequence (14205 bp)
Overview 1 RT 1: 1507-6557 bp Neighborhood of RT #1 [1507, 6557] DDE_3 IS5 RVT_N RVT-GII GIIM DUF772 Feature: gene Location: 1507-1695 bp Feature: domain Description: DDE_3 Location: 1516-1606 bp Feature: domain Description: DDE_3 Location: 1516-1606 bp Feature: gene Location: 3032-3535 bp Feature: domain Description: IS5 Location: 3038-3506 bp Feature: domain Description: IS5 Location: 3038-3506 bp Feature: gene Location: 3645-5117 bp Feature: RT Description: RVT_N Location: 3717-3960 bp Feature: RT Description: RVT_N Location: 3717-3960 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4005-4647 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4005-4647 bp Feature: domain Description: GIIM Note: maturase Location: 4698-4932 bp Feature: domain Description: GIIM Note: maturase Location: 4698-4932 bp Feature: gene Location: 5721-6341 bp Feature: domain Description: DUF772 Location: 5724-5883 bp Feature: domain Description: DUF772 Location: 572 4-5883 bp Feature: gene Location: 6450-6557 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), IS5 (COG3039), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598)

Seq: LPAI01000034.1 Burkholderia ubonensis strain MSMB1598WGS MSMB1598WGS_13, whole genome shotgun sequence (20138 bp)
Overview 1 RT 1: 1835-5490 bp Neighborhood of RT #1 [1835, 5633] COG3517 COG3517 RVT-GII REC CheX Feature: gene Location: 1835-2218 bp Feature: gene Location: 2561-3439 bp Feature: domain Description: COG3517 Location: 2585-3092 bp Feature: domain Description: COG3 517 Location: 2585-3 092 bp Feature: domain Description: COG3517 Location: 3092-3434 bp Feature: domain Description: COG3 517 Location: 3 092-3 43 4 bp Feature: gene Location: 3758-4228 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3794-4049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 794-4049 bp Feature: gene Location: 4266-4631 bp Feature: domain Description: REC Location: 4281-4623 bp Feature: domain Description: REC Location: 4281-4623 bp Feature: gene Location: 4674-5633 bp Feature: domain Description: CheX Location: 5190-5490 bp Feature: domain Description: CheX Location: 5190-5490 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3517 (Predicted component of the type VI protein secretion system ), RVT-GII, REC (smart00448), CheX (pfam13690)

Seq: LPAI01000020.1 Burkholderia ubonensis strain MSMB1598WGS MSMB1598WGS_117, whole genome shotgun sequence (59040 bp)
Overview 1 RT 1: 190-6957 bp Neighborhood of RT #1 [190, 6968] PRK07533 DUF3141 RVT-Retrons VOC AraC Feature: gene Location: 190-969 bp Feature: domain Description: PRK07533 Location: 208-964 bp Feature: domain Description: PRK07533 Location: 208-964 bp Feature: gene Location: 1132-3414 bp Feature: domain Description: DUF3141 Location: 1258-2989 bp Feature: domain Description: DUF314 1 Location: 1258-2989 bp Feature: gene Location: 3663-5012 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4128-4764 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4 128-4 764 bp Feature: gene Location: 5315-5701 bp Feature: domain Description: VOC Location: 5330-5651 bp Feature: domain Description: VOC Location: 5330-5651 bp Feature: gene Location: 6141-6968 bp Feature: domain Description: AraC Location: 6603-6957 bp Feature: domain Description: AraC Location: 6603-6957 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, VOC (cl14632), AraC (COG2207)

Seq: LPAI01000118.1 Burkholderia ubonensis strain MSMB1598WGS MSMB1598WGS_86, whole genome shotgun sequence (1803 bp)
Overview 1 RT 1: 87-1308 bp Neighborhood of RT #1 [87, 1451] RVT-GII GIIM Feature: gene Location: 87-1451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 420-1035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 420-1035 bp Feature: domain Description: GIIM Note: maturase Location: 1092-1308 bp Feature: domain Description: GIIM Note: maturase Location: 1092-1308 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)