myRT

myRT report for GCA_001528495.1_ASM152849v1

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Seq: LPCM01000049.1 Burkholderia vietnamiensis strain AU15829 AU15829_143, whole genome shotgun sequence (49512 bp)
Overview 1 RT 1: 37680-40017 bp Neighborhood of RT #1 [37680, 40017] RVT-GII GIIM Feature: gene Location: 37680-39047 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38013-38628 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3801 3-38628 bp Feature: domain Description: GIIM Note: maturase Location: 38688-38889 bp Feature: domain Description: GIIM Note: maturase Location: 38688-38889 bp Feature: gene Location: 39172-39411 bp Feature: gene Location: 39685-40017 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LPCM01000129.1 Burkholderia vietnamiensis strain AU15829 AU15829_77, whole genome shotgun sequence (101340 bp)
Overview 1 RT 1: 27561-32583 bp Neighborhood of RT #1 [27561, 32606] YhaK PRK03767 RVT-GII GIIM LrgB Feature: gene Location: 27561-28286 bp Feature: domain Description: YhaK Location: 27564-28266 bp Feature: domain Description: YhaK Location: 2 7564-2 82 66 bp Feature: gene Location: 28349-28951 bp Feature: domain Description: PRK03767 Location: 28352-28946 bp Feature: domain Description: PRK03767 Location: 2 8352 -2 8946 bp Feature: gene Location: 29448-30818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29784-30396 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 9784-30396 bp Feature: domain Description: GIIM Note: maturase Location: 30456-30660 bp Feature: domain Description: GIIM Note: maturase Location: 30456-30660 bp Feature: gene Location: 31255-31584 bp Feature: gene Location: 31872-32606 bp Feature: domain Description: LrgB Location: 31947-32583 bp Feature: domain Description: LrgB Location: 31947-32 583 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhaK (COG1741), PRK03767 (NAD(P)H:quinone oxidoreductase; Provisional), RVT-GII, GIIM (pfam08388), LrgB (pfam04172)

Seq: LPCM01000055.1 Burkholderia vietnamiensis strain AU15829 AU15829_149, whole genome shotgun sequence (16028 bp)
Overview 1 RT 1: 6204-11119 bp Neighborhood of RT #1 [6204, 11139] PolY_like COG4544 RVT-GII Histone_HNS Feature: gene Location: 6204-7682 bp Feature: domain Description: PolY_like Location: 6222-7209 bp Feature: domain Description: PolY_like Location: 6222-7209 bp Feature: gene Location: 7603-8319 bp Feature: domain Description: COG4544 Location: 7690-8140 bp Feature: domain Description: COG4544 Location: 7690-8140 bp Feature: gene Location: 8807-9412 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9134-9413 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 913 4-9413 bp Feature: gene Location: 9580-10431 bp Feature: gene Location: 10843-11139 bp Feature: domain Description: Histone_HNS Location: 10861-11119 bp Feature: domain Description: Histone_HNS Location: 10861-11119 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), PolY_like (cd03468), COG4544 (Uncharacterized conserved protein ), RVT-GII

Seq: LPCM01000111.1 Burkholderia vietnamiensis strain AU15829 AU15829_60, whole genome shotgun sequence (24750 bp)
Overview 1 RT 1: 12464-15271 bp Neighborhood of RT #1 [12464, 15271] HTH_XRE RVT-Retrons COG3905 Feature: gene Location: 12464-12694 bp Feature: gene Location: 12754-13014 bp Feature: domain Description: HTH_XRE Location: 12760-12910 bp Feature: domain Description: HTH_XRE Location: 12760-12910 bp Feature: gene Location: 13212-14030 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13221-13710 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13221-13710 bp Feature: gene Location: 14443-14622 bp Feature: domain Description: COG3905 Location: 14479-14602 bp Feature: domain Description: COG3905 Location: 14 4 79-14 602 bp Feature: gene Location: 14873-15271 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, COG3905 (Predicted transcriptional regulator )