myRT

myRT report for GCA_001528545.1_ASM152854v1

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Seq: LPCP01000095.1 Burkholderia vietnamiensis strain AU25340 AU25340_95, whole genome shotgun sequence (33025 bp)
Overview 1 RT 1: 29409-32951 bp Neighborhood of RT #1 [29409, 32950] CAP_ED HTH_Crp_2 IS5 RVT-GII GIIM Feature: gene Location: 29409-30128 bp Ori: KVR86926.1 Feature: domain Description: CAP_ED Location: 29445-29760 bp Feature: domain Description: CAP_ED Location: 29445-29760 bp Feature: domain Description: HTH_Crp_2 Location: 29859-30057 bp Feature: domain Description: HTH_Crp_2 Location: 29859-30057 bp Feature: gene Location: 30867-31427 bp Feature: domain Description: IS5 Location: 31059-31389 bp Feature: domain Description: IS5 Location: 31 059-31 389 bp Feature: gene Location: 31904-32950 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32117-32774 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 321 1 7-32774 bp Feature: domain Description: GIIM Note: maturase Location: 32852-32951 bp Feature: domain Description: GIIM Note: maturase Location: 32852-32951 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CAP_ED (cl00047), HTH_Crp_2 (pfam13545), IS5 (COG3039), RVT-GII, GIIM (pfam08388)

Seq: LPCP01000052.1 Burkholderia vietnamiensis strain AU25340 AU25340_56, whole genome shotgun sequence (19829 bp)
Overview 1 RT 1: 9129-15276 bp Neighborhood of RT #1 [9129, 15284] VgrG DUF2345 RVT-UG7 PinE Feature: gene Location: 9129-11501 bp Feature: domain Description: VgrG Location: 9177-11004 bp Feature: domain Description: VgrG Location: 9177-11004 bp Feature: domain Description: DUF2345 Location: 11133-11502 bp Feature: domain Description: DUF2 345 Location: 11133-11502 bp Feature: gene Location: 11940-12674 bp Feature: gene Location: 12655-14295 bp Ori: KVR93745.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 13072-13492 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 13072 -13492 bp Feature: gene Location: 14709-15284 bp Ori: KVR93749.1 Feature: domain Description: PinE Location: 14718-15276 bp Feature: domain Description: PinE Location: 14718-152 76 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VgrG (COG3501), DUF2345 (pfam10106), RVT-UG7, PinE (COG1961)