myRT

myRT report for GCA_001529035.1_ASM152903v1

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Seq: LPDV01000075.1 Burkholderia ubonensis strain MSMB1173WGS MSMB1173WGS_2, whole genome shotgun sequence (25923 bp)
Overview 1 RT 1: 22131-25923 bp Neighborhood of RT #1 [22131, 25923] CheX REC RVT-GII Feature: gene Location: 22131-23090 bp Ori: KVT99991.1 Feature: domain Description: CheX Location: 22647-22947 bp Feature: domain Description: CheX Location: 22647-22947 bp Feature: gene Location: 23133-23498 bp Ori: KVT99992.1 Feature: domain Description: REC Location: 23148-23490 bp Feature: domain Description: REC Location: 231 48-23490 bp Feature: gene Location: 23536-24006 bp Ori: KVT99993.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23575-23827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23575-23827 bp Feature: gene Location: 25549-25923 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CheX (pfam13690), REC (smart00448), RVT-GII

Seq: LPDV01000139.1 Burkholderia ubonensis strain MSMB1173WGS MSMB1173WGS_78, whole genome shotgun sequence (189980 bp)
Overview 1 RT 1: 12358-18206 bp Neighborhood of RT #1 [12358, 18206] YwqK MORN_2 phage_P2_V RVT-UG17 SLATT_5 Feature: gene Location: 12358-13551 bp Ori: KVT93172.1 Feature: domain Description: YwqK Location: 12433-12997 bp Feature: domain Description: YwqK Location: 12 433-12 997 bp Feature: domain Description: MORN_2 Location: 13162-13225 bp Feature: domain Description: MORN_2 Location: 13162 -132 2 5 bp Feature: gene Location: 13654-14241 bp Ori: KVT93173.1 Feature: domain Description: phage_P2_V Location: 14035-14230 bp Feature: domain Description: phage_P2 _V Location: 14035-142 30 bp Feature: gene Location: 15173-16573 bp Ori: KVT93174.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 15407-16019 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 15407-16019 bp Feature: gene Location: 16895-17419 bp Ori: KVT93175.1 Feature: domain Description: SLATT_5 Location: 16898-17381 bp Feature: domain Description: SLATT_5 Location: 16898-17381 bp Feature: gene Location: 17472-18206 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YwqK (COG2849), MORN_2 (pfam07661), phage_P2_V (TIGR01644), RVT-UG17, SLATT_5 (pfam18160)

Seq: LPDV01000053.1 Burkholderia ubonensis strain MSMB1173WGS MSMB1173WGS_147, whole genome shotgun sequence (1831 bp)
Overview 1 RT 1: 381-1602 bp Neighborhood of RT #1 [381, 1745] RVT-GII GIIM Feature: gene Location: 381-1745 bp Ori: KVU02814.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 714-1329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 714-13 29 bp Feature: domain Description: GIIM Note: maturase Location: 1386-1602 bp Feature: domain Description: GIIM Note: maturase Location: 13 86-1602 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LPDV01000077.1 Burkholderia ubonensis strain MSMB1173WGS MSMB1173WGS_21, whole genome shotgun sequence (90865 bp)
Overview 1 RT 1: 905-3424 bp Neighborhood of RT #1 [905, 3424] RVT-GII GIIM Feature: gene Location: 905-2311 bp Ori: KVT99751.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1244-1859 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 124 4 -1859 bp Feature: domain Description: GIIM Note: maturase Location: 1913-2132 bp Feature: domain Description: GIIM Note: maturase Location: 1913-2132 bp Feature: gene Location: 2759-3016 bp Feature: gene Location: 3155-3424 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LPDV01000155.1 Burkholderia ubonensis strain MSMB1173WGS MSMB1173WGS_92, whole genome shotgun sequence (81415 bp)
Overview 1 RT 1: 3906-9893 bp Neighborhood of RT #1 [3906, 9904] DUF3141 RVT-Retrons VOC AraC Feature: gene Location: 3906-4085 bp Feature: gene Location: 4069-6351 bp Ori: KVT91202.1 Feature: domain Description: DUF3141 Location: 4195-5926 bp Feature: domain Description: DUF3141 Location: 4195 -5 926 bp Feature: gene Location: 6600-7949 bp Ori: KVT91203.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7065-7701 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7065 -7701 bp Feature: gene Location: 8252-8638 bp Ori: KVT91204.1 Feature: domain Description: VOC Location: 8267-8588 bp Feature: domain Description: VOC Location: 8267-85 88 bp Feature: gene Location: 9077-9904 bp Ori: KVT91205.1 Feature: domain Description: AraC Location: 9539-9893 bp Feature: domain Description: AraC Location: 95 39-9893 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3141 (pfam11339), RVT-Retrons, VOC (cl14632), AraC (COG2207)