myRT

myRT report for GCA_001529125.1_ASM152912v1

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Seq: LPEA01000162.1 Burkholderia ubonensis strain MSMB1183WGS MSMB1183WGS_98, whole genome shotgun sequence (299203 bp)
Overview 1 RT 1: 59722-63680 bp Neighborhood of RT #1 [59722, 63703] ASCH_yqfb_like ASCH_yqfb_like DUF5131 RVT-DGRs Avd_like DUF1566 Feature: gene Location: 59722-60420 bp Feature: domain Description: ASCH_yqfb_like Location: 59740-59818 bp Feature: domain Description: ASCH_yqfb_like Location: 59740-5981 8 bp Feature: domain Description: ASCH_yqfb_like Location: 60088-60247 bp Feature: domain Description: ASCH_yqfb_like Location: 60088-60247 bp Feature: gene Location: 60417-61523 bp Feature: domain Description: DUF5131 Location: 60429-61512 bp Feature: domain Description: DUF51 31 Location: 60429-61 51 2 bp Feature: gene Location: 61520-62527 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 61610-62372 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 61 61 0-62372 bp Feature: gene Location: 62850-63224 bp Feature: domain Description: Avd_like Location: 62877-63183 bp Feature: domain Description: Avd_like Location: 62877-631 83 bp Feature: gene Location: 63239-63703 bp Feature: domain Description: DUF1566 Location: 63476-63680 bp Feature: domain Description: DUF1 566 Location: 63476-63680 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ASCH_yqfb_like (cd06552), DUF5131 (pfam07505), RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: LPEA01000147.1 Burkholderia ubonensis strain MSMB1183WGS MSMB1183WGS_84, whole genome shotgun sequence (80244 bp)
Overview 1 RT 1: 145-2240 bp Neighborhood of RT #1 [145, 2383] RVT-GII REC CheX Feature: gene Location: 145-345 bp Feature: gene Location: 367-960 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 385-640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 385-640 bp Feature: gene Location: 1016-1381 bp Feature: domain Description: REC Location: 1031-1373 bp Feature: domain Description: REC Location: 1031-1373 bp Feature: gene Location: 1424-2383 bp Feature: domain Description: CheX Location: 1940-2240 bp Feature: domain Description: CheX Location: 1940-2 2 40 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT REC (smart00448), CheX (pfam13690), RVT-GII

Seq: LPEA01000129.1 Burkholderia ubonensis strain MSMB1183WGS MSMB1183WGS_68, whole genome shotgun sequence (30003 bp)
Overview 1 RT 1: 190-7060 bp Neighborhood of RT #1 [190, 7071] PRK07533 DUF3141 RVT-Retrons VOC Cupin_6 AraC Feature: gene Location: 190-969 bp Feature: domain Description: PRK07533 Location: 208-964 bp Feature: domain Description: PRK0753 3 Location: 208-964 bp Feature: gene Location: 1260-3518 bp Feature: domain Description: DUF3141 Location: 1386-3117 bp Feature: domain Description: DUF3 141 Location: 13 86-3 117 bp Feature: gene Location: 3767-5116 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4232-4868 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 423 2-4868 bp Feature: gene Location: 5419-5805 bp Feature: domain Description: VOC Location: 5434-5755 bp Feature: domain Description: VOC Location: 543 4-5755 bp Feature: gene Location: 6244-7071 bp Feature: domain Description: Cupin_6 Location: 6253-6712 bp Feature: domain Description: Cupin_6 Location: 6253 -6712 bp Feature: domain Description: AraC Location: 6721-7060 bp Feature: domain Description: AraC Location: 6721-7060 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, VOC (cl14632), Cupin_6 (pfam12852), AraC (COG2207)