myRT

myRT report for GCA_001529135.1_ASM152913v1

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Seq: LPED01000104.1 Burkholderia ubonensis strain MSMB1212WGS MSMB1212WGS_83, whole genome shotgun sequence (117404 bp)
Overview 1 RT 1: 110546-116544 bp Neighborhood of RT #1 [110546, 116544] AraC VOC RVT-Retrons DUF3141 Feature: gene Location: 110546-111373 bp Ori: KVU41700.1 Feature: domain Description: AraC Location: 111008-111362 bp Feature: domain Description: AraC Location: 1 1 1 008-1 1 1 362 bp Feature: gene Location: 111812-112198 bp Ori: KVU41701.1 Feature: domain Description: VOC Location: 111827-112148 bp Feature: domain Description: VOC Location: 1 1 1 827-1 1 21 48 bp Feature: gene Location: 112501-113850 bp Ori: KVU41702.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 112966-113602 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 1 2966-1 1 3602 bp Feature: gene Location: 114099-116381 bp Ori: KVU41703.1 Feature: domain Description: DUF3141 Location: 114225-115956 bp Feature: domain Description: DUF31 41 Location: 1 1 4225-1 1 5956 bp Feature: gene Location: 116365-116544 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AraC (COG2207), VOC (cl14632), RVT-Retrons, DUF3141 (pfam11339)

Seq: LPED01000119.1 Burkholderia ubonensis strain MSMB1212WGS MSMB1212WGS_97, whole genome shotgun sequence (591175 bp)
Overview 1 RT 1: 370491-383404 bp Neighborhood of RT #1 [370491, 383404] YprA YprA DECH_helic RVT-G2L4 DUF262 DUF1524 Feature: gene Location: 370491-371234 bp Feature: gene Location: 371243-377497 bp Ori: KVU39940.1 Feature: domain Description: YprA Location: 371372-372269 bp Feature: domain Description: YprA Location: 371372 -372 2 69 bp Feature: domain Description: YprA Location: 374456-374696 bp Feature: domain Description: YprA Location: 374456-374696 bp Feature: domain Description: DECH_helic Location: 376136-376343 bp Feature: domain Description: DECH_helic Location: 376136-376343 bp Feature: gene Location: 378456-379619 bp Ori: KVU39941.1 Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 378462-378921 bp Feature: RT Description: RVT-G2 L4 Note: G2 L4 RT Location: 378462 -37892 1 bp Feature: gene Location: 379953-382040 bp Ori: KVU39942.1 Feature: domain Description: DUF262 Location: 379986-380610 bp Feature: domain Description: DUF2 62 Location: 379986-380610 bp Feature: domain Description: DUF1524 Location: 381465-381867 bp Feature: domain Description: DUF152 4 Location: 381465-381867 bp Feature: gene Location: 383069-383404 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YprA (COG1205), DECH_helic (TIGR03817), RVT-G2L4, DUF262 (pfam03235), DUF1524 (pfam07510)

Seq: LPED01000111.1 Burkholderia ubonensis strain MSMB1212WGS MSMB1212WGS_9, whole genome shotgun sequence (1853 bp)
Overview 1 RT 1: 402-1623 bp Neighborhood of RT #1 [402, 1766] RVT-GII GIIM Feature: gene Location: 402-1766 bp Ori: KVU41231.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 735-1350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73 5-13 50 bp Feature: domain Description: GIIM Note: maturase Location: 1407-1623 bp Feature: domain Description: GIIM Note: maturase Location: 1407-1623 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LPED01000072.1 Burkholderia ubonensis strain MSMB1212WGS MSMB1212WGS_54, whole genome shotgun sequence (1895 bp)
Overview 1 RT 1: 76-1303 bp Neighborhood of RT #1 [76, 1482] RVT-GII GIIM Feature: gene Location: 76-1482 bp Ori: KVU46351.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 415-1030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 15-1030 bp Feature: domain Description: GIIM Note: maturase Location: 1084-1303 bp Feature: domain Description: GIIM Note: maturase Location: 1084 -1303 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)