myRT

myRT report for GCA_001529345.1_ASM152934v1

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Seq: LPEL01000035.1 Burkholderia ubonensis strain MSMB1225WGS MSMB1225WGS_41, whole genome shotgun sequence (167063 bp)
Overview 1 RT 1: 106097-112209 bp Neighborhood of RT #1 [106097, 112220] PRK11890 DUF3141 RVT-Retrons VOC Cupin_6 AraC Feature: gene Location: 106097-106408 bp Feature: domain Description: PRK11890 Location: 106103-106295 bp Feature: domain Description: PRK1 1 890 Location: 1 061 03-1 06295 bp Feature: gene Location: 106418-108667 bp Feature: domain Description: DUF3141 Location: 106544-108266 bp Feature: domain Description: DUF31 41 Location: 1 06544-1 08266 bp Feature: gene Location: 108916-110265 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 109381-110017 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 09381 -1 1 001 7 bp Feature: gene Location: 110568-110954 bp Feature: domain Description: VOC Location: 110583-110904 bp Feature: domain Description: VOC Location: 1 1 0583-1 1 0904 bp Feature: gene Location: 111393-112220 bp Feature: domain Description: Cupin_6 Location: 111402-111861 bp Feature: domain Description: Cupin_6 Location: 1 1 1 402-1 1 1 861 bp Feature: domain Description: AraC Location: 111870-112209 bp Feature: domain Description: AraC Location: 1 1 1 870-1 1 2209 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11890 (phosphate acetyltransferase; Provisional), DUF3141 (pfam11339), RVT-Retrons, VOC (cl14632), Cupin_6 (pfam12852), AraC (COG2207)

Seq: LPEL01000013.1 Burkholderia ubonensis strain MSMB1225WGS MSMB1225WGS_21, whole genome shotgun sequence (385812 bp)
Overview 1 RT 1: 285937-289301 bp Neighborhood of RT #1 [285937, 289315] HTH_ARSR RVT-DGRs Avd_like DUF1566 Feature: gene Location: 285937-286368 bp Feature: domain Description: HTH_ARSR Location: 285955-286087 bp Feature: domain Description: HTH_ARSR Location: 2 85955-2 86087 bp Feature: gene Location: 286397-286597 bp Feature: gene Location: 286594-287607 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 286684-287449 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 86684-2 87449 bp Feature: gene Location: 287930-288307 bp Feature: domain Description: Avd_like Location: 287957-288263 bp Feature: domain Description: Avd_like Location: 2 87957-2 882 63 bp Feature: gene Location: 288839-289315 bp Feature: domain Description: DUF1566 Location: 289073-289301 bp Feature: domain Description: DUF1566 Location: 2 89073-2 89301 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARSR (smart00418), RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: LPEL01000040.1 Burkholderia ubonensis strain MSMB1225WGS MSMB1225WGS_46, whole genome shotgun sequence (28460 bp)
Overview 1 RT 1: 3247-6257 bp Neighborhood of RT #1 [3247, 6400] RVT-GII REC CheX Feature: gene Location: 3247-3630 bp Feature: gene Location: 3880-4134 bp Feature: gene Location: 4162-4977 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4180-4435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4180-443 5 bp Feature: gene Location: 5033-5398 bp Feature: domain Description: REC Location: 5048-5390 bp Feature: domain Description: REC Location: 5048-53 90 bp Feature: gene Location: 5441-6400 bp Feature: domain Description: CheX Location: 5957-6257 bp Feature: domain Description: CheX Location: 5957-6257 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, REC (smart00448), CheX (pfam13690)