myRT

myRT report for GCA_001529865.1_ASM152986v1

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Seq: LPEB01000174.1 Burkholderia ubonensis strain MSMB1188WGS MSMB1188WGS_75, whole genome shotgun sequence (21649 bp)
Overview 1 RT 1: 64-4567 bp Neighborhood of RT #1 [64, 4581] DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII YscO III_secr_ATP Feature: gene Location: 64-330 bp Feature: domain Description: DDE_Tnp_IS66 Location: 82-166 bp Feature: domain Description: DDE_Tnp_IS66 Location: 82-1 66 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 184-295 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 84-295 bp Feature: gene Location: 340-600 bp Feature: gene Location: 748-2547 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1462-2152 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 462-21 52 bp Feature: gene Location: 2705-3181 bp Feature: domain Description: YscO Location: 2792-3167 bp Feature: domain Description: YscO Location: 2792-31 67 bp Feature: gene Location: 3196-4581 bp Feature: domain Description: III_secr_ATP Location: 3304-4567 bp Feature: domain Description: III_secr_ATP Location: 3304-4567 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YscO (pfam07321), III_secr_ATP (TIGR02546), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII

Seq: LPEB01000139.1 Burkholderia ubonensis strain MSMB1188WGS MSMB1188WGS_43, whole genome shotgun sequence (1855 bp)
Overview 1 RT 1: 404-1625 bp Neighborhood of RT #1 [404, 1768] RVT-GII GIIM Feature: gene Location: 404-1768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 737-1352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 737-1352 bp Feature: domain Description: GIIM Note: maturase Location: 1409-1625 bp Feature: domain Description: GIIM Note: maturase Location: 1409-162 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LPEB01000023.1 Burkholderia ubonensis strain MSMB1188WGS MSMB1188WGS_12, whole genome shotgun sequence (169063 bp)
Overview 1 RT 1: 161836-168609 bp Neighborhood of RT #1 [161836, 168614] Cupin_6 AraC VOC RVT-Retrons DUF3141 PRK07533 Feature: gene Location: 161836-162663 bp Feature: domain Description: Cupin_6 Location: 161845-162304 bp Feature: domain Description: Cupin_6 Location: 161845-1623 04 bp Feature: domain Description: AraC Location: 162313-162652 bp Feature: domain Description: AraC Location: 1623 13 -162652 bp Feature: gene Location: 163103-163489 bp Feature: domain Description: VOC Location: 163118-163439 bp Feature: domain Description: VOC Location: 163 118-163 43 9 bp Feature: gene Location: 163792-165141 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 164257-164893 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 164257-164893 bp Feature: gene Location: 165390-167672 bp Feature: domain Description: DUF3141 Location: 165516-167247 bp Feature: domain Description: DUF3 141 Location: 165516-167247 bp Feature: gene Location: 167835-168614 bp Feature: domain Description: PRK07533 Location: 167853-168609 bp Feature: domain Description: PRK0753 3 Location: 167853 -168609 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cupin_6 (pfam12852), AraC (COG2207), VOC (cl14632), RVT-Retrons, DUF3141 (pfam11339), PRK07533 (enoyl- reductase FabI)