myRT

myRT report for GCA_001530305.1_ASM153030v1

Download annotations/find similar RTs

Seq: LPEN01000110.1 Burkholderia ubonensis strain MSMB1264WGS MSMB1264WGS_73, whole genome shotgun sequence (473610 bp)
Overview 1 RT 1: 466208-473530 bp Neighborhood of RT #1 [466208, 473530] pyrE PRK12862 RVT-GII GIIM Feature: gene Location: 466208-466894 bp Feature: domain Description: pyrE Location: 466232-466847 bp Feature: domain Description: pyrE Location: 466232-466847 bp Feature: gene Location: 467361-469631 bp Feature: domain Description: PRK12862 Location: 467367-469626 bp Feature: domain Description: PRK1 2862 Location: 467367-469626 bp Feature: gene Location: 470143-471549 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 470482-471097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 470482-471 097 bp Feature: domain Description: GIIM Note: maturase Location: 471151-471370 bp Feature: domain Description: GIIM Note: maturase Location: 471 1 51 -471 370 bp Feature: gene Location: 471836-473530 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pyrE (TIGR00336), PRK12862 (malic enzyme; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: LPEN01000064.1 Burkholderia ubonensis strain MSMB1264WGS MSMB1264WGS_31, whole genome shotgun sequence (101785 bp)
Overview 1 RT 1: 85007-88662 bp Neighborhood of RT #1 [85007, 88805] COG3517 COG3517 RVT-GII REC CheX Feature: gene Location: 85007-85390 bp Feature: gene Location: 85733-86611 bp Feature: domain Description: COG3517 Location: 85757-86264 bp Feature: domain Description: COG3517 Location: 85757-862 64 bp Feature: domain Description: COG3517 Location: 86264-86606 bp Feature: domain Description: COG3517 Location: 862 64-86606 bp Feature: gene Location: 86651-87400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86687-86942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86687-86942 bp Feature: gene Location: 87438-87803 bp Feature: domain Description: REC Location: 87453-87795 bp Feature: domain Description: REC Location: 87453-87795 bp Feature: gene Location: 87846-88805 bp Feature: domain Description: CheX Location: 88362-88662 bp Feature: domain Description: CheX Location: 88362 -88662 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3517 (Predicted component of the type VI protein secretion system ), RVT-GII, REC (smart00448), CheX (pfam13690)

Seq: LPEN01000018.1 Burkholderia ubonensis strain MSMB1264WGS MSMB1264WGS_115, whole genome shotgun sequence (181759 bp)
Overview 1 RT 1: 170176-176948 bp Neighborhood of RT #1 [170176, 176953] Cupin_6 AraC VOC RVT-Retrons DUF3141 PRK07533 Feature: gene Location: 170176-171003 bp Feature: domain Description: Cupin_6 Location: 170185-170644 bp Feature: domain Description: Cupin_6 Location: 170185-170644 bp Feature: domain Description: AraC Location: 170653-170992 bp Feature: domain Description: AraC Location: 170653 -170992 bp Feature: gene Location: 171442-171828 bp Feature: domain Description: VOC Location: 171457-171778 bp Feature: domain Description: VOC Location: 171457-171778 bp Feature: gene Location: 172131-173480 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 172596-173232 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 172596-173 23 2 bp Feature: gene Location: 173729-176011 bp Feature: domain Description: DUF3141 Location: 173855-175586 bp Feature: domain Description: DUF3 141 Location: 173 855-175586 bp Feature: gene Location: 176174-176953 bp Feature: domain Description: PRK07533 Location: 176192-176948 bp Feature: domain Description: PRK0753 3 Location: 176192-176948 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cupin_6 (pfam12852), AraC (COG2207), VOC (cl14632), RVT-Retrons, DUF3141 (pfam11339), PRK07533 (enoyl- reductase FabI)

Seq: LPEN01000026.1 Burkholderia ubonensis strain MSMB1264WGS MSMB1264WGS_122, whole genome shotgun sequence (1693 bp)
Overview 1 RT 1: 381-1602 bp Neighborhood of RT #1 [381, 1693] RVT-GII GIIM Feature: gene Location: 381-1693 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 714-1329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 714 -1329 bp Feature: domain Description: GIIM Note: maturase Location: 1386-1602 bp Feature: domain Description: GIIM Note: maturase Location: 1386-1602 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)