myRT

myRT report for GCA_001530375.1_ASM153037v1

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Seq: LPFJ01000062.1 Burkholderia ubonensis strain MSMB1473WGS MSMB1473WGS_155, whole genome shotgun sequence (32885 bp)
Overview 1 RT 1: 185-7055 bp Neighborhood of RT #1 [185, 7066] PRK07533 DUF3141 RVT-Retrons VOC Cupin_6 AraC Feature: gene Location: 185-964 bp Feature: domain Description: PRK07533 Location: 203-959 bp Feature: domain Description: PRK07533 Location: 203-959 bp Feature: gene Location: 1255-3513 bp Feature: domain Description: DUF3141 Location: 1381-3112 bp Feature: domain Description: DUF31 41 Location: 1 381 -31 1 2 bp Feature: gene Location: 3762-5111 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4227-4863 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4227-4863 bp Feature: gene Location: 5414-5800 bp Feature: domain Description: VOC Location: 5429-5750 bp Feature: domain Description: VOC Location: 5429-5750 bp Feature: gene Location: 6239-7066 bp Feature: domain Description: Cupin_6 Location: 6248-6707 bp Feature: domain Description: Cupin_6 Location: 6248-6707 bp Feature: domain Description: AraC Location: 6716-7055 bp Feature: domain Description: AraC Location: 671 6-7055 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, VOC (cl14632), Cupin_6 (pfam12852), AraC (COG2207)

Seq: LPFJ01000034.1 Burkholderia ubonensis strain MSMB1473WGS MSMB1473WGS_13, whole genome shotgun sequence (5634 bp)
Overview 1 RT 1: 126-3282 bp Neighborhood of RT #1 [126, 3533] RVT-GII GIIM TraL Feature: gene Location: 126-1376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 339-993 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 339-993 bp Feature: domain Description: GIIM Note: maturase Location: 1074-1299 bp Feature: domain Description: GIIM Note: maturase Location: 1074-12 99 bp Feature: gene Location: 2198-2836 bp Feature: gene Location: 2826-3533 bp Feature: domain Description: TraL Location: 2847-3282 bp Feature: domain Description: TraL Location: 2 847-32 82 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), TraL (pfam07178)

Seq: LPFJ01000015.1 Burkholderia ubonensis strain MSMB1473WGS MSMB1473WGS_112, whole genome shotgun sequence (15027 bp)
Overview 1 RT 1: 3920-7051 bp Neighborhood of RT #1 [3920, 7098] COG3436 COG3436 RVT-GII GIIM DDE_Tnp_IS66 TroA_e Feature: gene Location: 3920-4426 bp Feature: domain Description: COG3436 Location: 3923-4058 bp Feature: domain Description: COG3 43 6 Location: 3 923 -4058 bp Feature: domain Description: COG3436 Location: 4106-4403 bp Feature: domain Description: COG3 43 6 Location: 4106-4403 bp Feature: gene Location: 4944-6206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5148-5805 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5148-5805 bp Feature: domain Description: GIIM Note: maturase Location: 5883-6099 bp Feature: domain Description: GIIM Note: maturase Location: 5883 -6099 bp Feature: gene Location: 6306-6605 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6309-6570 bp Feature: domain Description: DDE_Tnp_IS66 Location: 63 09-6570 bp Feature: gene Location: 6859-7098 bp Feature: domain Description: TroA_e Location: 6865-7051 bp Feature: domain Description: TroA_e Location: 6865-7051 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), TroA_e (cd01142)

Seq: LPFJ01000118.1 Burkholderia ubonensis strain MSMB1473WGS MSMB1473WGS_55, whole genome shotgun sequence (6820 bp)
Overview 1 RT 1: 3415-6140 bp Neighborhood of RT #1 [3415, 6226] DDE_5 PHA02517 RVT-GII GIIM Feature: gene Location: 3415-4293 bp Feature: domain Description: DDE_5 Location: 3457-4273 bp Feature: domain Description: DDE_5 Location: 34 57-4 273 bp Feature: gene Location: 4426-4896 bp Feature: domain Description: PHA02517 Location: 4429-4876 bp Feature: domain Description: PHA02517 Location: 4 4 29-4 876 bp Feature: gene Location: 4985-6226 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5183-5840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5183-584 0 bp Feature: domain Description: GIIM Note: maturase Location: 5918-6140 bp Feature: domain Description: GIIM Note: maturase Location: 5918-614 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_5 (pfam13546), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: LPFJ01000027.1 Burkholderia ubonensis strain MSMB1473WGS MSMB1473WGS_123, whole genome shotgun sequence (36545 bp)
Overview 1 RT 1: 31843-36545 bp Neighborhood of RT #1 [31843, 36545] CheX REC RVT-GII VgrG Feature: gene Location: 31843-32802 bp Feature: domain Description: CheX Location: 32359-32659 bp Feature: domain Description: CheX Location: 3235 9-3265 9 bp Feature: gene Location: 32845-33210 bp Feature: domain Description: REC Location: 32860-33202 bp Feature: domain Description: REC Location: 32860-33202 bp Feature: gene Location: 33248-33919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33284-33539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33284-335 39 bp Feature: gene Location: 34613-34975 bp Feature: domain Description: VgrG Location: 34679-34934 bp Feature: domain Description: VgrG Location: 34679-34934 bp Feature: gene Location: 35038-36545 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CheX (pfam13690), REC (smart00448), RVT-GII, VgrG (COG3501)