myRT

myRT report for GCA_001531705.1_ASM153170v1

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Seq: LPHR01000084.1 Burkholderia ubonensis strain MSMB2112WGS MSMB2112WGS_175, whole genome shotgun sequence (5448 bp)
Overview 1 RT 1: 2037-5343 bp Neighborhood of RT #1 [2037, 5411] DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM Feature: gene Location: 2037-2690 bp Ori: KWC00759.1 Feature: domain Description: DDE_Tnp_IS66 Location: 2040-2514 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2040-251 4 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2535-2646 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2535-2646 bp Feature: gene Location: 2754-3014 bp Feature: gene Location: 4137-5411 bp Ori: KWC00761.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4413-5037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 441 3-5037 bp Feature: domain Description: GIIM Note: maturase Location: 5133-5343 bp Feature: domain Description: GIIM Note: maturase Location: 51 33-5343 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388)

Seq: LPHR01000111.1 Burkholderia ubonensis strain MSMB2112WGS MSMB2112WGS_2, whole genome shotgun sequence (1656 bp)
Overview 1 RT 1: 59-953 bp Neighborhood of RT #1 [59, 1348] RVT-GII Feature: gene Location: 59-1348 bp Ori: KWB97989.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 263-953 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 63-953 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: LPHR01000147.1 Burkholderia ubonensis strain MSMB2112WGS MSMB2112WGS_3, whole genome shotgun sequence (42257 bp)
Overview 1 RT 1: 1-1759 bp Neighborhood of RT #1 [1, 1902] RVT-GII REC CheX Feature: gene Location: 1-497 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37-292 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 7-292 bp Feature: gene Location: 535-900 bp Ori: KWB93559.1 Feature: domain Description: REC Location: 550-892 bp Feature: domain Description: REC Location: 550-892 bp Feature: gene Location: 943-1902 bp Ori: KWB93560.1 Feature: domain Description: CheX Location: 1459-1759 bp Feature: domain Description: CheX Location: 1459-1759 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, REC (smart00448), CheX (pfam13690)

Seq: LPHR01000182.1 Burkholderia ubonensis strain MSMB2112WGS MSMB2112WGS_61, whole genome shotgun sequence (133241 bp)
Overview 1 RT 1: 103291-110152 bp Neighborhood of RT #1 [103291, 110163] PRK07533 DUF3141 RVT-Retrons VOC Cupin_6 AraC Feature: gene Location: 103291-104070 bp Ori: KWB91494.1 Feature: domain Description: PRK07533 Location: 103309-104065 bp Feature: domain Description: PRK07533 Location: 103309-104 065 bp Feature: gene Location: 104361-106610 bp Ori: KWB91495.1 Feature: domain Description: DUF3141 Location: 104487-106218 bp Feature: domain Description: DUF314 1 Location: 104 4 87-106218 bp Feature: gene Location: 106859-108208 bp Ori: KWB91496.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 107324-107960 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 107324 -107960 bp Feature: gene Location: 108511-108897 bp Ori: KWB91497.1 Feature: domain Description: VOC Location: 108526-108847 bp Feature: domain Description: VOC Location: 108526-10884 7 bp Feature: gene Location: 109336-110163 bp Ori: KWB91498.1 Feature: domain Description: Cupin_6 Location: 109345-109804 bp Feature: domain Description: Cupin_6 Location: 10934 5-109804 bp Feature: domain Description: AraC Location: 109813-110152 bp Feature: domain Description: AraC Location: 109813-110152 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK07533 (enoyl- reductase FabI), DUF3141 (pfam11339), RVT-Retrons, VOC (cl14632), Cupin_6 (pfam12852), AraC (COG2207)

Seq: LPHR01000173.1 Burkholderia ubonensis strain MSMB2112WGS MSMB2112WGS_53, whole genome shotgun sequence (760 bp)
Overview 1 RT 1: 1-601 bp Neighborhood of RT #1 [1, 705] RVT-GII GIIM Feature: gene Location: 1-705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-304 bp Feature: domain Description: GIIM Note: maturase Location: 382-601 bp Feature: domain Description: GIIM Note: maturase Location: 382-601 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LPHR01000161.1 Burkholderia ubonensis strain MSMB2112WGS MSMB2112WGS_42, whole genome shotgun sequence (5761 bp)
Overview 1 RT 1: 3273-5441 bp Neighborhood of RT #1 [3273, 5488] AAA_22 RVT-GII Feature: gene Location: 3273-3494 bp Feature: gene Location: 3585-4112 bp Feature: domain Description: AAA_22 Location: 3747-4110 bp Feature: domain Description: AAA_22 Location: 3747-4110 bp Feature: gene Location: 4421-5488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4832-5441 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4832-5441 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_22 (pfam13401), RVT-GII

Seq: LPHR01000068.1 Burkholderia ubonensis strain MSMB2112WGS MSMB2112WGS_160, whole genome shotgun sequence (1124 bp)
Overview 1 RT 1: 90-789 bp Neighborhood of RT #1 [90, 1124] RVT-GII Feature: gene Location: 90-1124 bp Ori: KWC03956.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99-789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99-7 89 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII