myRT

myRT report for GCA_001535605.1_ASM153560v1

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Seq: LRGC01000018.1 Bacteroides stercoris strain CL09T03C01 AA415_contig0018, whole genome shotgun sequence (61902 bp)
Overview 1 RT 1: 1591-5994 bp Neighborhood of RT #1 [1591, 6023] DUF4141 RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_J Feature: gene Location: 1591-1866 bp Feature: gene Location: 1870-2097 bp Ori: KWR52696.1 Feature: domain Description: DUF4141 Location: 1885-2038 bp Feature: domain Description: DUF41 41 Location: 1 885-2038 bp Feature: gene Location: 2618-4453 bp Ori: KWR52697.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2912-3734 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 291 2-3734 bp Feature: domain Description: Intron_maturas2 Location: 3893-4262 bp Feature: domain Description: Intron_maturas2 Location: 3893-4262 bp Feature: domain Description: HNHc Note: nucleases Location: 4286-4427 bp Feature: domain Description: HNHc Note: nucleases Location: 4286-4427 bp Feature: gene Location: 4446-4982 bp Feature: gene Location: 5010-6023 bp Ori: KWR52699.1 Feature: domain Description: Bac_Flav_CT_J Location: 5031-5994 bp Feature: domain Description: Bac_Flav_CT_J Location: 5031 -5994 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Bac_Flav_CT_J (TIGR03782)

Seq: LRGC01000017.1 Bacteroides stercoris strain CL09T03C01 AA415_contig0017, whole genome shotgun sequence (61940 bp)
Overview 1 RT 1: 388-6624 bp Neighborhood of RT #1 [388, 6680] DNA_pol_A DNA_pol_A RVT-UG9 ComA-like_MBL-fold ComA-like_MBL-fold COG3547 COG3547 Feature: gene Location: 388-1827 bp Ori: KWR52834.1 Feature: domain Description: DNA_pol_A Location: 1048-1441 bp Feature: domain Description: DNA_pol_A Location: 1048-1441 bp Feature: domain Description: DNA_pol_A Location: 1576-1723 bp Feature: domain Description: DNA_pol_A Location: 1576-172 3 bp Feature: gene Location: 1824-4205 bp Ori: KWR52835.1 Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 2742-3357 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 2 742 -3357 bp Feature: gene Location: 4180-5130 bp Ori: KWR52836.1 Feature: domain Description: ComA-like_MBL-fold Location: 4189-4453 bp Feature: domain Description: ComA-like_MBL-fold Location: 4189-4453 bp Feature: domain Description: ComA-like_MBL-fold Location: 4702-4870 bp Feature: domain Description: ComA-like_MBL-fold Location: 4702 -4870 bp Feature: gene Location: 5541-6680 bp Ori: KWR52837.1 Feature: domain Description: COG3547 Location: 5556-5853 bp Feature: domain Description: COG3547 Location: 5556-5853 bp Feature: domain Description: COG3547 Location: 6174-6624 bp Feature: domain Description: COG3547 Location: 6174-662 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DNA_pol_A (pfam00476), RVT-UG9, ComA-like_MBL-fold (cd07731), COG3547 (Transposase )