myRT

myRT report for GCA_001535615.1_ASM153561v1

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Seq: LRDP01000011.1 Bacteroides ovatus strain CL09T03C03 AA414_contig0011, whole genome shotgun sequence (170271 bp)
Overview 1 RT 1: 55695-67962 bp Neighborhood of RT #1 [55695, 68087] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons PDDEXK_2 Feature: gene Location: 55695-57497 bp Feature: domain Description: rpsA Location: 55764-57381 bp Feature: domain Description: rpsA Location: 55764-57381 bp Feature: gene Location: 57666-63551 bp Feature: domain Description: DUF4011 Location: 58824-59337 bp Feature: domain Description: DUF401 1 Location: 58824-59337 bp Feature: domain Description: DEXXQc_SF1 Location: 59676-60297 bp Feature: domain Description: DEXXQc_SF1 Location: 59676-60297 bp Feature: domain Description: DEXXQc_SF1 Location: 61104-61863 bp Feature: domain Description: DEXXQc_SF1 Location: 61 1 04-61 863 bp Feature: domain Description: TIGR00376 Location: 61992-62382 bp Feature: domain Description: TIGR00376 Location: 61 992-62382 bp Feature: domain Description: MTES_1575 Location: 62535-62820 bp Feature: domain Description: MTES_1 575 Location: 62535-62820 bp Feature: domain Description: DUF3320 Location: 63060-63201 bp Feature: domain Description: DUF3320 Location: 63060-63201 bp Feature: gene Location: 63553-64683 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 63874-64417 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 63874-6441 7 bp Feature: gene Location: 64889-67000 bp Feature: gene Location: 67263-68087 bp Feature: domain Description: PDDEXK_2 Location: 67284-67962 bp Feature: domain Description: PDDEXK_2 Location: 67284-67962 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons, PDDEXK_2 (pfam12784)

Seq: LRDP01000088.1 Bacteroides ovatus strain CL09T03C03 AA414_contig0088, whole genome shotgun sequence (2491 bp)
Overview 1 RT 1: 115-1900 bp Neighborhood of RT #1 [115, 1923] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 115-1923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 379-1198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 379-1198 bp Feature: domain Description: Intron_maturas2 Location: 1273-1600 bp Feature: domain Description: Intron_maturas2 Location: 12 73-1600 bp Feature: domain Description: HNHc Note: nucleases Location: 1753-1900 bp Feature: domain Description: HNHc Note: nucleases Location: 1753-1900 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: LRDP01000036.1 Bacteroides ovatus strain CL09T03C03 AA414_contig0036, whole genome shotgun sequence (74384 bp)
Overview 1 RT 1: 17400-28721 bp Neighborhood of RT #1 [17400, 28723] PRK13351 COG4646 Helicase_C matK RVT-GII Intron_maturas2 N6_Mtase N6_Mtase COG4646 DUF1896 Feature: gene Location: 17400-19325 bp Feature: domain Description: PRK13351 Location: 17403-19257 bp Feature: domain Description: PRK13 3 51 Location: 17403 -19257 bp Feature: gene Location: 19983-22748 bp Feature: domain Description: COG4646 Location: 20097-21237 bp Feature: domain Description: COG4646 Location: 20097-2123 7 bp Feature: domain Description: Helicase_C Location: 21450-21648 bp Feature: domain Description: Helicase_C Location: 21450-21648 bp Feature: gene Location: 22735-24537 bp Feature: domain Description: matK Location: 22804-22891 bp Feature: domain Description: matK Location: 22804-22891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22999-23821 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22999-23 821 bp Feature: domain Description: Intron_maturas2 Location: 23971-24205 bp Feature: domain Description: Intron_maturas2 Location: 23 971-24205 bp Feature: gene Location: 25090-28281 bp Feature: domain Description: N6_Mtase Location: 25402-25510 bp Feature: domain Description: N6_Mtase Location: 25402-25510 bp Feature: domain Description: N6_Mtase Location: 25648-26005 bp Feature: domain Description: N6_Mtase Location: 25648-26005 bp Feature: domain Description: COG4646 Location: 27334-28270 bp Feature: domain Description: COG4646 Location: 273 3 4-28270 bp Feature: gene Location: 28271-28723 bp Feature: domain Description: DUF1896 Location: 28301-28721 bp Feature: domain Description: DUF1896 Location: 283 01-28721 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13351 (elongation factor G-like protein), COG4646 (Adenine-specific DNA methylase, N12 class ), Helicase_C (pfam00271), matK (CHL00002), RVT-GII, Intron_maturas2 (pfam01348), N6_Mtase (pfam02384), DUF1896 (pfam08989)

Seq: LRDP01000021.1 Bacteroides ovatus strain CL09T03C03 AA414_contig0021, whole genome shotgun sequence (99421 bp)
Overview 1 RT 1: 2173-7355 bp Neighborhood of RT #1 [2173, 7816] DUF3875 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4141 Feature: gene Location: 2173-2343 bp Feature: domain Description: DUF3875 Location: 2182-2338 bp Feature: domain Description: DUF3875 Location: 2182-2338 bp Feature: gene Location: 2440-4269 bp Feature: domain Description: Bac_Flav_CT_G Location: 2443-4255 bp Feature: domain Description: Bac_Flav_CT_G Location: 24 4 3-4 255 bp Feature: gene Location: 4816-6627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5080-5902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5080-5902 bp Feature: domain Description: Intron_maturas2 Location: 5977-6292 bp Feature: domain Description: Intron_maturas2 Location: 5977-6292 bp Feature: domain Description: HNHc Note: nucleases Location: 6448-6598 bp Feature: domain Description: HNHc Note: nucleases Location: 64 4 8-6598 bp Feature: gene Location: 6705-6983 bp Feature: domain Description: Bac_Flav_CT_G Location: 6723-6981 bp Feature: domain Description: Bac_Flav_CT_G Location: 6723-6981 bp Feature: gene Location: 7184-7816 bp Feature: domain Description: DUF4141 Location: 7202-7355 bp Feature: domain Description: DUF4 14 1 Location: 7202-7355 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3875 (pfam12991), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4141 (pfam13605)

Seq: LRDP01000087.1 Bacteroides ovatus strain CL09T03C03 AA414_contig0087, whole genome shotgun sequence (2511 bp)
Overview 1 RT 1: 126-1866 bp Neighborhood of RT #1 [126, 1937] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 126-1937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 390-1212 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 390-1212 bp Feature: domain Description: Intron_maturas2 Location: 1401-1611 bp Feature: domain Description: Intron_maturas2 Location: 1401-1611 bp Feature: domain Description: HNHc Note: nucleases Location: 1761-1866 bp Feature: domain Description: HNHc Note: nucleases Location: 1761-1866 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: LRDP01000027.1 Bacteroides ovatus strain CL09T03C03 AA414_contig0027, whole genome shotgun sequence (91033 bp)
Overview 1 RT 1: 34425-41067 bp Neighborhood of RT #1 [34425, 41123] REC RVT-Retrons Phage_int_SAM_5 INTN1_C_like NGN_SP_UpxY KOW_NusG Feature: gene Location: 34425-36128 bp Feature: domain Description: REC Location: 35220-35478 bp Feature: domain Description: REC Location: 35220-35478 bp Feature: gene Location: 36125-36769 bp Feature: gene Location: 36747-38966 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 36948-37533 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 36 948-37533 bp Feature: gene Location: 39245-40210 bp Feature: domain Description: Phage_int_SAM_5 Location: 39278-39533 bp Feature: domain Description: Phage_int_SAM_5 Location: 39278-39533 bp Feature: domain Description: INTN1_C_like Location: 39638-40115 bp Feature: domain Description: INTN1_C_like Location: 396 38-40115 bp Feature: gene Location: 40545-41123 bp Feature: domain Description: NGN_SP_UpxY Location: 40623-40905 bp Feature: domain Description: NGN_SP_UpxY Location: 406 23-40905 bp Feature: domain Description: KOW_NusG Location: 40956-41067 bp Feature: domain Description: KOW_NusG Location: 40956 -4106 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT REC (smart00448), RVT-Retrons, Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), NGN_SP_UpxY (cd09895), KOW_NusG (cd06091)