myRT

myRT report for GCA_001535905.1_ASM153590v1

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Seq: LIHW01000006.1 Pseudomonas syringae pv. papulans strain CFBP 1754 papu1754_contig_103, whole genome shotgun sequence (3431 bp)
Overview 1 RT 1: 1-3275 bp Neighborhood of RT #1 [1, 3275] RVT-G2L4 SLATT_5 Feature: gene Location: 1-200 bp Feature: gene Location: 651-1898 bp Ori: KWS42784.1 Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 864-1455 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 864-1 455 bp Feature: gene Location: 1969-2604 bp Ori: KWS42785.1 Feature: domain Description: SLATT_5 Location: 1972-2572 bp Feature: domain Description: SLATT_5 Location: 1 972-2572 bp Feature: gene Location: 2805-3275 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-G2L4, SLATT_5 (pfam18160)

Seq: LIHW01000090.1 Pseudomonas syringae pv. papulans strain CFBP 1754 papu1754_contig_22, whole genome shotgun sequence (50588 bp)
Overview 1 RT 1: 43663-50392 bp Neighborhood of RT #1 [43663, 50392] HxlR PRK11453 RVT-UG15 Feature: gene Location: 43663-44118 bp Ori: KWS36907.1 Feature: domain Description: HxlR Location: 43690-43981 bp Feature: domain Description: HxlR Location: 43690-43981 bp Feature: gene Location: 44438-45334 bp Ori: KWS36908.1 Feature: domain Description: PRK11453 Location: 44462-45293 bp Feature: domain Description: PRK11453 Location: 44462 -452 93 bp Feature: gene Location: 46256-47563 bp Ori: KWS36909.1 Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 46361-46772 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 46361-46772 bp Feature: gene Location: 47777-48655 bp Feature: gene Location: 49337-50392 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HxlR (pfam01638), PRK11453 (O-acetylserine/cysteine exporter), RVT-UG15

Seq: LIHW01000058.1 Pseudomonas syringae pv. papulans strain CFBP 1754 papu1754_contig_150, whole genome shotgun sequence (19483 bp)
Overview 1 RT 1: 16403-19153 bp Neighborhood of RT #1 [16403, 19287] T6SS_HCP RVT-UG17 Feature: gene Location: 16403-17047 bp Feature: gene Location: 17395-17889 bp Ori: KWS39114.1 Feature: domain Description: T6SS_HCP Location: 17413-17806 bp Feature: domain Description: T6SS_HCP Location: 17413 -17806 bp Feature: gene Location: 18271-19287 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 18541-19153 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 18541-19153 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT T6SS_HCP (pfam05638), RVT-UG17

Seq: LIHW01000159.1 Pseudomonas syringae pv. papulans strain CFBP 1754 papu1754_contig_86, whole genome shotgun sequence (52689 bp)
Overview 1 RT 1: 46615-52422 bp Neighborhood of RT #1 [46615, 52422] AcrR KTSC RVT-Retrons Feature: gene Location: 46615-47241 bp Ori: KWS32155.1 Feature: domain Description: AcrR Location: 46654-47158 bp Feature: domain Description: AcrR Location: 4 6654 -4 7158 bp Feature: gene Location: 47482-47682 bp Ori: KWS32156.1 Feature: domain Description: KTSC Location: 47503-47674 bp Feature: domain Description: KTSC Location: 4 7503-4 7674 bp Feature: gene Location: 48143-49914 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 48278-48905 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4 8278-4 8905 bp Feature: gene Location: 50457-51458 bp Feature: gene Location: 51909-52422 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AcrR (COG1309), KTSC (pfam13619), RVT-Retrons