myRT

myRT report for GCA_001536285.1_IMG-taxon_2634166352_annotated_assembly

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Seq: FAOZ01000079.1 Frankia sp. DSM 45899 genome assembly IMG-taxon 2634166352 annotated assembly, contig Ga0074812_179, whole genome shotgun sequence (1942 bp)
Overview 1 RT 1: 80-1250 bp Neighborhood of RT #1 [80, 1333] RVT-GII GIIM Feature: gene Location: 80-1333 bp Ori: CUU61290.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 284-950 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 284-950 bp Feature: domain Description: GIIM Note: maturase Location: 1037-1250 bp Feature: domain Description: GIIM Note: maturase Location: 1 037-1 250 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: FAOZ01000031.1 Frankia sp. DSM 45899 genome assembly IMG-taxon 2634166352 annotated assembly, contig Ga0074812_131, whole genome shotgun sequence (108347 bp)
Overview 1 RT 1: 47722-51896 bp 2 RT 2: 67356-73977 bp Neighborhood of RT #1 [47722, 51896] Methyltransf_19 RVT-GII GIIM Neighborhood of RT #2 [67356, 74297] Transposase_mut RVT-GII GIIM rve YdfJ Feature: gene Location: 47722-48084 bp Feature: gene Location: 48345-49217 bp Ori: CUU59748.1 Feature: domain Description: Methyltransf_19 Location: 48477-49212 bp Feature: domain Description: Methyltransf_19 Location: 48477-492 12 bp Feature: gene Location: 49214-50677 bp Ori: CUU59749.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49556-50246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49556-502 46 bp Feature: domain Description: GIIM Note: maturase Location: 50318-50549 bp Feature: domain Description: GIIM Note: maturase Location: 50318-50549 bp Feature: gene Location: 51176-51373 bp Feature: gene Location: 51618-51896 bp Feature: gene Location: 67356-68066 bp Feature: gene Location: 68350-69591 bp Ori: CUU59766.1 Feature: domain Description: Transposase_mut Location: 68401-69487 bp Feature: domain Description: Transposase_mut Location: 68401-69487 bp Feature: gene Location: 69987-71264 bp Ori: CUU59767.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70203-70860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 702 03-70860 bp Feature: domain Description: GIIM Note: maturase Location: 70938-71163 bp Feature: domain Description: GIIM Note: maturase Location: 70938-71163 bp Feature: gene Location: 71213-71593 bp Ori: CUU59768.1 Feature: domain Description: rve Location: 71225-71474 bp Feature: domain Description: rve Location: 712 2 5-71474 bp Feature: gene Location: 71793-74297 bp Ori: CUU59769.1 Feature: domain Description: YdfJ Location: 71832-73977 bp Feature: domain Description: YdfJ Location: 71832 -73977 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Methyltransf_19 (pfam04672), RVT-GII, GIIM (pfam08388), Transposase_mut (pfam00872), rve (pfam00665), YdfJ (COG2409)

Seq: FAOZ01000025.1 Frankia sp. DSM 45899 genome assembly IMG-taxon 2634166352 annotated assembly, contig Ga0074812_125, whole genome shotgun sequence (124588 bp)
Overview 1 RT 1: 5429-11707 bp 2 RT 2: 87827-91995 bp Neighborhood of RT #1 [5429, 11742] Phn-HD RVT-GII GIIM COG4584 PRK09183 Neighborhood of RT #2 [87827, 91995] Rve RVT_N RVT-GII GIIM Feature: gene Location: 5429-6028 bp Ori: CUU59119.1 Feature: domain Description: Phn-HD Location: 5477-6008 bp Feature: domain Description: Phn-HD Location: 5477-6008 bp Feature: gene Location: 6122-6331 bp Feature: gene Location: 7921-9303 bp Ori: CUU59121.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8137-8800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 813 7-8800 bp Feature: domain Description: GIIM Note: maturase Location: 8884-9088 bp Feature: domain Description: GIIM Note: maturase Location: 8884-9088 bp Feature: gene Location: 9314-10945 bp Ori: CUU59122.1 Feature: domain Description: COG4584 Location: 9371-10148 bp Feature: domain Description: COG4584 Location: 93 71-10148 bp Feature: gene Location: 10942-11742 bp Ori: CUU59123.1 Feature: domain Description: PRK09183 Location: 10993-11707 bp Feature: domain Description: PRK09183 Location: 10993 -11707 bp Feature: gene Location: 87827-88267 bp Feature: gene Location: 88389-89159 bp Ori: CUU59194.1 Feature: domain Description: Rve Location: 88395-88914 bp Feature: domain Description: Rve Location: 883 95-88914 bp Feature: gene Location: 89041-90846 bp Ori: CUU59195.1 Feature: domain Description: RVT_N Location: 89140-89380 bp Feature: domain Description: RVT_N Location: 89140-893 80 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89437-90082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8943 7-90082 bp Feature: domain Description: GIIM Note: maturase Location: 90151-90379 bp Feature: domain Description: GIIM Note: maturase Location: 90151-903 79 bp Feature: gene Location: 91766-91864 bp Feature: gene Location: 91837-91995 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phn-HD (TIGR03276), RVT-GII, GIIM (pfam08388), COG4584 (Transposase ), PRK09183 (transposase/IS protein; Provisional), Rve (COG3316), RVT_N (pfam13655)

Seq: FAOZ01000005.1 Frankia sp. DSM 45899 genome assembly IMG-taxon 2634166352 annotated assembly, contig Ga0074812_105, whole genome shotgun sequence (511258 bp)
Overview 1 RT 1: 32841-39639 bp Neighborhood of RT #1 [32841, 39639] Phage_int_SAM_3 INT_ICEBs1_C_like RVT-UG23 Feature: gene Location: 32841-33983 bp Ori: CUU55377.1 Feature: domain Description: Phage_int_SAM_3 Location: 33078-33228 bp Feature: domain Description: Phage_int_SAM_3 Location: 33078-33228 bp Feature: domain Description: INT_ICEBs1_C_like Location: 33462-33924 bp Feature: domain Description: INT_ICEBs1_C_like Location: 334 62-33924 bp Feature: gene Location: 34012-34965 bp Feature: gene Location: 35605-37074 bp Ori: CUU55379.1 Feature: RT Description: RVT-UG23 Note: UG23 RT Location: 35797-36394 bp Feature: RT Description: RVT-UG23 Note: UG23 RT Location: 35797-36394 bp Feature: gene Location: 37215-37361 bp Feature: gene Location: 37921-39639 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_3 (pfam14659), INT_ICEBs1_C_like (cd01189), RVT-UG23

Seq: FAOZ01000043.1 Frankia sp. DSM 45899 genome assembly IMG-taxon 2634166352 annotated assembly, contig Ga0074812_143, whole genome shotgun sequence (57975 bp)
Overview 1 RT 1: 45290-52698 bp Neighborhood of RT #1 [45290, 53045] TraC-F-type SXT_TraD RVT-GII GIIM Replic_Relax Feature: gene Location: 45290-47257 bp Ori: CUU60633.1 Feature: domain Description: TraC-F-type Location: 45665-46979 bp Feature: domain Description: TraC-F-type Location: 45 665 -46979 bp Feature: gene Location: 47387-49480 bp Ori: CUU60634.1 Feature: domain Description: SXT_TraD Location: 48644-48827 bp Feature: domain Description: SXT_TraD Location: 48644-48827 bp Feature: gene Location: 50096-51532 bp Ori: CUU60635.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50417-51107 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 0417-5 1107 bp Feature: domain Description: GIIM Note: maturase Location: 51182-51410 bp Feature: domain Description: GIIM Note: maturase Location: 5 1182-5 1410 bp Feature: gene Location: 51544-52077 bp Feature: gene Location: 52074-53045 bp Ori: CUU60637.1 Feature: domain Description: Replic_Relax Location: 52143-52698 bp Feature: domain Description: Replic_Relax Location: 5 2143-5 2698 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraC-F-type (TIGR02746), SXT_TraD (TIGR03743), RVT-GII, GIIM (pfam08388), Replic_Relax (pfam13814)