myRT

myRT report for GCA_001537085.1_12082_3_93

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Seq: FCLY01000004.1 Serratia marcescens strain 2880STDY5683001 genome assembly, contig ERS381468SCcontig000004, whole genome shotgun sequence (324960 bp)
Overview 1 RT 1: 180125-188471 bp Neighborhood of RT #1 [180125, 188476] HTH_1 PBP2_DntR_like_1 PRK10819 RVT-Retrons RVT-UG4 FimA PRK15287 Feature: gene Location: 180125-181027 bp Ori: CVG82388.1 Gene: yidZ Feature: domain Description: HTH_1 Location: 180149-180320 bp Feature: domain Description: HTH_1 Location: 1 801 49-1 80320 bp Feature: domain Description: PBP2_DntR_like_1 Location: 180416-181007 bp Feature: domain Description: PBP2_DntR_like_1 Location: 1 8041 6-1 81 007 bp Feature: gene Location: 181256-181615 bp Ori: CVG82416.1 Gene: tonB_2 Feature: domain Description: PRK10819 Location: 181325-181568 bp Feature: domain Description: PRK1 081 9 Location: 1 81 325-1 81 568 bp Feature: gene Location: 181901-182851 bp Ori: CVG82448.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 182000-182591 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 82000-1 82591 bp Feature: gene Location: 182838-183791 bp Feature: gene Location: 185505-186344 bp Feature: gene Location: 186386-187048 bp Ori: CVG82515.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 186419-186866 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1 8641 9-1 86866 bp Feature: gene Location: 187390-187965 bp Ori: CVG82543.1 Gene: smfA_4 Feature: domain Description: FimA Location: 187453-187963 bp Feature: domain Description: FimA Location: 1 87453-1 87963 bp Feature: gene Location: 187976-188476 bp Ori: CVG82571.1 Gene: prsF_2 Feature: domain Description: PRK15287 Location: 188030-188471 bp Feature: domain Description: PRK1 5287 Location: 1 88030-1 88471 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_1 (pfam00126), PBP2_DntR_like_1 (cd08460), PRK10819 (transport protein TonB; Provisional), RVT-Retrons, RVT-UG4, FimA (pfam16970), PRK15287 (fimbrial minor subunit StfF)