myRT

myRT report for GCA_001538785.1_12045_8_18

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Seq: FCGE01000011.1 Serratia marcescens strain 2880STDY5683025 genome assembly, contig ERS381490SCcontig000011, whole genome shotgun sequence (131727 bp)
Overview 1 RT 1: 123972-130335 bp Neighborhood of RT #1 [123972, 130346] DUF5375 Prim_Zn_Ribbon TOPRIM_primases COG3378 RVT-Retrons TIR_2 COG3943 YcbX Feature: gene Location: 123972-124310 bp Feature: domain Description: DUF5375 Location: 123993-124281 bp Feature: domain Description: DUF5375 Location: 1 23993-1 24281 bp Feature: gene Location: 124321-126654 bp Feature: domain Description: Prim_Zn_Ribbon Location: 124417-124525 bp Feature: domain Description: Prim_Zn_Ribbon Location: 1 2441 7-1 24525 bp Feature: domain Description: TOPRIM_primases Location: 124960-125167 bp Feature: domain Description: TOPRIM_primases Location: 1 24960-1 251 67 bp Feature: domain Description: COG3378 Location: 125200-126643 bp Feature: domain Description: COG3378 Location: 1 25200-1 26643 bp Feature: gene Location: 127220-128872 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 127544-128141 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 27544-1 281 41 bp Feature: domain Description: TIR_2 Location: 128471-128771 bp Feature: domain Description: TIR_2 Location: 1 28471 -1 28771 bp Feature: gene Location: 129187-129456 bp Feature: domain Description: COG3943 Location: 129226-129448 bp Feature: domain Description: COG3943 Location: 1 29226-1 29448 bp Feature: gene Location: 129582-130346 bp Feature: domain Description: YcbX Location: 129585-130335 bp Feature: domain Description: YcbX Location: 1 29585-1 30335 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5375 (pfam17345), Prim_Zn_Ribbon (smart00778), TOPRIM_primases (cd01029), COG3378 (Phage- or plasmid-associated DNA primase ), RVT-Retrons, TIR_2 (pfam13676), COG3943 (Uncharacterized conserved protein ), YcbX (COG3217)

Seq: FCGE01000051.1 Serratia marcescens strain 2880STDY5683025 genome assembly, contig ERS381490SCcontig000051, whole genome shotgun sequence (31594 bp)
Overview 1 RT 1: 8279-13622 bp Neighborhood of RT #1 [8279, 13759] umuC PRK10276 RVT-GII StbA Plasmid_stab_B Plasmid_stab_B Feature: gene Location: 8279-9550 bp Feature: domain Description: umuC Location: 8282-9545 bp Feature: domain Description: umuC Location: 82 82 -9545 bp Feature: gene Location: 9550-9975 bp Feature: domain Description: PRK10276 Location: 9553-9961 bp Feature: domain Description: PRK102 76 Location: 9553-9961 bp Feature: gene Location: 10381-11865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10783-11473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10783-11473 bp Feature: gene Location: 12114-13085 bp Feature: domain Description: StbA Location: 12117-13062 bp Feature: domain Description: StbA Location: 12 117-13062 bp Feature: gene Location: 13088-13759 bp Feature: domain Description: Plasmid_stab_B Location: 13103-13310 bp Feature: domain Description: Plasmid_stab_B Location: 13103-13310 bp Feature: domain Description: Plasmid_stab_B Location: 13415-13622 bp Feature: domain Description: Plasmid_stab_B Location: 13415-1362 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, StbA (pfam06406), Plasmid_stab_B (pfam10784), umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)