myRT

myRT report for GCA_001542405.1_ASM154240v1

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Seq: LNCD01000118.1 Rhizobium altiplani strain BR 10423 contig68, whole genome shotgun sequence (6783 bp)
Overview 1 RT 1: 1535-4600 bp Neighborhood of RT #1 [1535, 4635] RVT-GII PRK13837 INT_RitB_C_like Feature: gene Location: 1535-1807 bp Ori: KWV45369.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1538-1799 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 538-1 799 bp Feature: gene Location: 2065-3396 bp Ori: KWV45370.1 Feature: domain Description: PRK13837 Location: 2068-3367 bp Feature: domain Description: PRK1 3837 Location: 2068-3367 bp Feature: gene Location: 4315-4635 bp Ori: KWV45371.1 Feature: domain Description: INT_RitB_C_like Location: 4384-4600 bp Feature: domain Description: INT_RitB_C_like Location: 4384-4600 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK13837 (two-component system VirA-like sensor kinase), INT_RitB_C_like (cd00797)

Seq: LNCD01000082.1 Rhizobium altiplani strain BR 10423 contig35, whole genome shotgun sequence (257570 bp)
Overview 1 RT 1: 1-2280 bp Neighborhood of RT #1 [1, 2288] RVT-GII GIIM HTH_MARR HTH_MARR COG4420 Feature: gene Location: 1-579 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-157 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-157 bp Feature: domain Description: GIIM Note: maturase Location: 214-421 bp Feature: domain Description: GIIM Note: maturase Location: 2 14-42 1 bp Feature: gene Location: 755-1630 bp Ori: KWV50969.1 Feature: domain Description: HTH_MARR Location: 1016-1184 bp Feature: domain Description: HTH_MARR Location: 1016-1184 bp Feature: domain Description: HTH_MARR Location: 1406-1505 bp Feature: domain Description: HTH_MARR Location: 1406-1505 bp Feature: gene Location: 1764-2288 bp Ori: KWV50970.1 Feature: domain Description: COG4420 Location: 1794-2280 bp Feature: domain Description: COG442 0 Location: 1794-2 2 80 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HTH_MARR (smart00347), COG4420 (Uncharacterized membrane protein )

Seq: LNCD01000028.1 Rhizobium altiplani strain BR 10423 contig123, whole genome shotgun sequence (6836 bp)
Overview 1 RT 1: 3696-6404 bp Neighborhood of RT #1 [3696, 6412] beta_CA_cladeC RVT-GII COG3293 Feature: gene Location: 3696-4424 bp Ori: KWV57484.1 Feature: domain Description: beta_CA_cladeC Location: 3837-4413 bp Feature: domain Description: beta_CA_cladeC Location: 3 83 7-4413 bp Feature: gene Location: 4426-4713 bp Feature: gene Location: 5297-5632 bp Ori: KWV57486.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5453-5564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5453 -5564 bp Feature: gene Location: 5996-6412 bp Ori: KWV57487.1 Feature: domain Description: COG3293 Location: 6026-6404 bp Feature: domain Description: COG3 293 Location: 6026-6404 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT beta_CA_cladeC (cd03378), RVT-GII, COG3293 (Transposase )

Seq: LNCD01000070.1 Rhizobium altiplani strain BR 10423 contig24, whole genome shotgun sequence (173148 bp)
Overview 1 RT 1: 170506-172990 bp Neighborhood of RT #1 [170506, 173148] SplB rnhB RVT-GII GIIM Feature: gene Location: 170506-171663 bp Ori: KWV52810.1 Feature: domain Description: SplB Location: 170716-171592 bp Feature: domain Description: SplB Location: 170716-171592 bp Feature: gene Location: 171774-172451 bp Ori: KWV52795.1 Feature: domain Description: rnhB Location: 171834-172413 bp Feature: domain Description: rnhB Location: 171834 -1724 13 bp Feature: gene Location: 172570-173148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 172573-172726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 172573-172726 bp Feature: domain Description: GIIM Note: maturase Location: 172783-172990 bp Feature: domain Description: GIIM Note: maturase Location: 172783-172990 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SplB, rnhB (PRK14551), RVT-GII, GIIM (pfam08388)

Seq: LNCD01000081.1 Rhizobium altiplani strain BR 10423 contig34, whole genome shotgun sequence (6032 bp)
Overview 1 RT 1: 60-1685 bp Neighborhood of RT #1 [60, 1693] RVT-GII PRK09173 PRK09174 Feature: gene Location: 60-308 bp Ori: KWV51249.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66-291 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66-291 bp Feature: gene Location: 560-1051 bp Ori: KWV51250.1 Feature: domain Description: PRK09173 Location: 575-1049 bp Feature: domain Description: PRK09173 Location: 5 75 -1049 bp Feature: gene Location: 1055-1693 bp Ori: KWV51251.1 Feature: domain Description: PRK09174 Location: 1061-1685 bp Feature: domain Description: PRK09174 Location: 1061-1685 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK09173 (F0F1 ATP synthase subunit B; Validated), PRK09174 (F0F1 ATP synthase subunit B)

Seq: LNCD01000091.1 Rhizobium altiplani strain BR 10423 contig43, whole genome shotgun sequence (105525 bp)
Overview 1 RT 1: 103599-105367 bp Neighborhood of RT #1 [103599, 105525] DUF4865 RhtB RVT-GII GIIM Feature: gene Location: 103599-104150 bp Ori: KWV49433.1 Feature: domain Description: DUF4865 Location: 103602-104142 bp Feature: domain Description: DUF486 5 Location: 1036 02-104142 bp Feature: gene Location: 104151-104786 bp Ori: KWV49434.1 Feature: domain Description: RhtB Location: 104154-104766 bp Feature: domain Description: RhtB Location: 104154-10476 6 bp Feature: gene Location: 104947-105525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104950-105103 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104950-105103 bp Feature: domain Description: GIIM Note: maturase Location: 105160-105367 bp Feature: domain Description: GIIM Note: maturase Location: 10516 0-10536 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4865 (pfam16157), RhtB (COG1280), RVT-GII, GIIM (pfam08388)

Seq: LNCD01000083.1 Rhizobium altiplani strain BR 10423 contig36, whole genome shotgun sequence (172896 bp)
Overview 1 RT 1: 54-5881 bp Neighborhood of RT #1 [54, 5919] RVT-GII GIIM AroG2 gluta_reduc_2 Feature: gene Location: 54-1097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63-675 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63-67 5 bp Feature: domain Description: GIIM Note: maturase Location: 732-939 bp Feature: domain Description: GIIM Note: maturase Location: 7 32-939 bp Feature: gene Location: 2838-4211 bp Ori: KWV50645.1 Feature: domain Description: AroG2 Location: 2841-4173 bp Feature: domain Description: AroG2 Location: 2841-417 3 bp Feature: gene Location: 4534-5919 bp Ori: KWV50646.1 Feature: domain Description: gluta_reduc_2 Location: 4546-5881 bp Feature: domain Description: gluta_reduc_2 Location: 4546-5881 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), AroG2 (COG3200), gluta_reduc_2 (TIGR01424)