myRT

myRT report for GCA_001542895.1_ASM154289v1

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Seq: LNDL01000094.1 Enterococcus faecium strain 87056200 Contig_53, whole genome shotgun sequence (87894 bp)
Overview 1 RT 1: 21840-27698 bp Neighborhood of RT #1 [21840, 27721] PRK06019 Adenylsuccinate_lyase_1 RVT-GII GIIM PRK09362 Feature: gene Location: 21840-22973 bp Feature: domain Description: PRK06019 Location: 21873-22962 bp Feature: domain Description: PRK0601 9 Location: 21 873-22962 bp Feature: gene Location: 22986-24281 bp Feature: domain Description: Adenylsuccinate_lyase_1 Location: 22998-24267 bp Feature: domain Description: Adenylsuccinate_lyase_1 Location: 22998-24267 bp Feature: gene Location: 24403-25791 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24724-25339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24724-25339 bp Feature: domain Description: GIIM Note: maturase Location: 25396-25612 bp Feature: domain Description: GIIM Note: maturase Location: 25396-2561 2 bp Feature: gene Location: 26360-26737 bp Feature: gene Location: 26993-27721 bp Feature: domain Description: PRK09362 Location: 26996-27698 bp Feature: domain Description: PRK09362 Location: 26996-27698 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06019 (phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed), Adenylsuccinate_lyase_1 (cd01360), RVT-GII, GIIM (pfam08388), PRK09362 (phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed)

Seq: LNDL01000107.1 Enterococcus faecium strain 87056200 Contig_8, whole genome shotgun sequence (43770 bp)
Overview 1 RT 1: 8208-13279 bp Neighborhood of RT #1 [8208, 13284] DUF3801 RVT-GII Intron_maturas2 HNHc VirD4 Maff2 Feature: gene Location: 8208-8684 bp Feature: domain Description: DUF3801 Location: 8265-8655 bp Feature: domain Description: DUF3801 Location: 82 65-8655 bp Feature: gene Location: 8681-9181 bp Feature: gene Location: 9741-11558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10005-10824 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10005-1082 4 bp Feature: domain Description: Intron_maturas2 Location: 10896-11199 bp Feature: domain Description: Intron_maturas2 Location: 10896-11199 bp Feature: domain Description: HNHc Note: nucleases Location: 11379-11523 bp Feature: domain Description: HNHc Note: nucleases Location: 11379-1152 3 bp Feature: gene Location: 11664-12992 bp Feature: domain Description: VirD4 Location: 11691-12855 bp Feature: domain Description: VirD4 Location: 11691-12 855 bp Feature: gene Location: 13069-13284 bp Feature: domain Description: Maff2 Location: 13072-13279 bp Feature: domain Description: Maff2 Location: 13072 -132 79 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirD4 (COG3505), Maff2 (pfam12750), DUF3801 (pfam12687), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: LNDL01000048.1 Enterococcus faecium strain 87056200 Contig_20, whole genome shotgun sequence (18875 bp)
Overview 1 RT 1: 7396-18862 bp Neighborhood of RT #1 [7396, 18875] RelB_DinJ FtsK_SpoIIIE RVT-GII HNHc FtsK Dcm HTH_XRE Rol_Rep_N Rep_trans DUF3789 RVT-GII HNHc ArdA NT_2-5OAS_ClassI-CCAase Feature: gene Location: 7396-7740 bp Feature: domain Description: RelB_DinJ Location: 7606-7732 bp Feature: domain Description: RelB_DinJ Location: 7606-773 2 bp Feature: gene Location: 7809-8792 bp Feature: domain Description: FtsK_SpoIIIE Location: 8466-8706 bp Feature: domain Description: FtsK_SpoIIIE Location: 8466-8706 bp Feature: gene Location: 9491-11293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9785-10481 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9785-10481 bp Feature: domain Description: HNHc Note: nucleases Location: 11021-11180 bp Feature: domain Description: HNHc Note: nucleases Location: 11021-11180 bp Feature: gene Location: 11395-11775 bp Feature: domain Description: FtsK Location: 11410-11650 bp Feature: domain Description: FtsK Location: 11410-11650 bp Feature: gene Location: 11820-12962 bp Feature: domain Description: Dcm Location: 11823-12936 bp Feature: domain Description: Dcm Location: 11823 -1293 6 bp Feature: gene Location: 13497-14681 bp Feature: domain Description: HTH_XRE Location: 13527-13671 bp Feature: domain Description: HTH_XRE Location: 13 527-13 671 bp Feature: domain Description: Rol_Rep_N Location: 13704-13968 bp Feature: domain Description: Rol_Rep_N Location: 13 704-13 968 bp Feature: domain Description: Rep_trans Location: 13992-14604 bp Feature: domain Description: Rep_trans Location: 13 992-14604 bp Feature: gene Location: 14696-14791 bp Feature: domain Description: DUF3789 Location: 14705-14789 bp Feature: domain Description: DUF3 789 Location: 14705-14789 bp Feature: gene Location: 15561-17471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15894-16632 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15894-1663 2 bp Feature: domain Description: HNHc Note: nucleases Location: 17187-17352 bp Feature: domain Description: HNHc Note: nucleases Location: 17187-173 52 bp Feature: gene Location: 17812-18315 bp Feature: domain Description: ArdA Location: 17830-18301 bp Feature: domain Description: ArdA Location: 1783 0-183 01 bp Feature: gene Location: 18442-18875 bp Feature: domain Description: NT_2-5OAS_ClassI-CCAase Location: 18532-18862 bp Feature: domain Description: NT_2-5OAS_ClassI-CCAase Location: 1853 2-18862 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FtsK (COG1674), Dcm (COG0270), RelB_DinJ (TIGR02384), FtsK_SpoIIIE (pfam01580), RVT-GII, HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), DUF3789 (pfam12664)
ArdA (pfam07275), NT_2-5OAS_ClassI-CCAase (cd05400)