myRT

myRT report for GCA_001543405.1_ASM154340v1

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Seq: LPNI01000023.1 Bacterium P201 isolate P201 scaffold_22, whole genome shotgun sequence (31460 bp)
Overview 1 RT 1: 25070-31460 bp Neighborhood of RT #1 [25070, 31460] SMC_N SMC_N VirE_N RVT-UG28b Feature: gene Location: 25070-26500 bp Ori: KWW28631.1 Feature: domain Description: SMC_N Location: 25073-25304 bp Feature: domain Description: SMC_N Location: 25073-25304 bp Feature: domain Description: SMC_N Location: 25739-25919 bp Feature: domain Description: SMC_N Location: 25739-2591 9 bp Feature: gene Location: 26502-27527 bp Ori: KWW28632.1 Feature: domain Description: VirE_N Location: 26682-27054 bp Feature: domain Description: VirE_N Location: 26682-27054 bp Feature: gene Location: 27759-29417 bp Ori: KWW28633.1 Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 28086-28836 bp Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 28086-28836 bp Feature: gene Location: 31131-31460 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SMC_N (pfam02463), VirE_N (pfam08800), RVT-UG28b

Seq: LPNI01000183.1 Bacterium P201 isolate P201 scaffold_182, whole genome shotgun sequence (1530 bp)
Overview 1 RT 1: 150-1302 bp Neighborhood of RT #1 [150, 1415] RVT-GII GIIM Feature: gene Location: 150-1415 bp Ori: KWW26520.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 354-1011 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 354-1011 bp Feature: domain Description: GIIM Note: maturase Location: 1098-1302 bp Feature: domain Description: GIIM Note: maturase Location: 1098-1302 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LPNI01000020.1 Bacterium P201 isolate P201 scaffold_19, whole genome shotgun sequence (46089 bp)
Overview 1 RT 1: 25400-31497 bp Neighborhood of RT #1 [25400, 31532] LacAB_rpiB LutB RVT-UG26 PRK12740 Feature: gene Location: 25400-25855 bp Ori: KWW28778.1 Feature: domain Description: LacAB_rpiB Location: 25415-25826 bp Feature: domain Description: LacAB_rpiB Location: 25415-25826 bp Feature: gene Location: 25833-27212 bp Ori: KWW28779.1 Feature: domain Description: LutB Location: 25878-27078 bp Feature: domain Description: LutB Location: 25878-27078 bp Feature: gene Location: 27309-28580 bp Ori: KWW28780.1 Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 27579-28197 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 27579-28197 bp Feature: gene Location: 28753-29253 bp Feature: gene Location: 29397-31532 bp Ori: KWW28782.1 Feature: domain Description: PRK12740 Location: 29442-31497 bp Feature: domain Description: PRK12740 Location: 29442-3 1497 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LacAB_rpiB (pfam02502), LutB (COG1139), RVT-UG26, PRK12740 (elongation factor G-like protein EF-G2)