myRT

myRT report for GCA_001543925.1_ASM154392v1

Download annotations/find similar RTs

Seq: LAXD01000001.1 Streptomyces thermoautotrophicus strain H1 H1_chromosome, whole genome shotgun sequence (4898395 bp)
Overview 1 RT 1: 198912-202038 bp 2 RT 2: 2069073-2073907 bp 3 RT 3: 2133001-2137244 bp 4 RT 4: 2141211-2146388 bp Neighborhood of RT #1 [198912, 202038] PTPS NrdG RVT-CRISPR-like YfmG Neighborhood of RT #2 [2069073, 2073924] COG5659 Transposase_mut RVT-GII GIIM LZ_Tnp_IS481 rve Neighborhood of RT #3 [2133001, 2137244] YkfC RVT-GII GIIM Neighborhood of RT #4 [2141211, 2146388] group_II_RT_mat RVT-GII GIIM DDE_5 Feature: gene Location: 198912-199307 bp Ori: KWW98576.1 Feature: domain Description: PTPS Location: 198942-199293 bp Feature: domain Description: PTPS Location: 1 98942-1 99293 bp Feature: gene Location: 199316-200038 bp Ori: KWW98577.1 Feature: domain Description: NrdG Location: 199364-200021 bp Feature: domain Description: NrdG Location: 1 99364-200021 bp Feature: gene Location: 200274-200972 bp Ori: KWW98578.1 Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 200418-200931 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 20041 8-200931 bp Feature: gene Location: 201056-201586 bp Ori: KWW98579.1 Feature: domain Description: YfmG Location: 201161-201581 bp Feature: domain Description: YfmG Location: 201 1 61 -201 581 bp Feature: gene Location: 201583-202038 bp Feature: gene Location: 2069073-2069585 bp Ori: KWX00875.1 Feature: domain Description: COG5659 Location: 2069211-2069577 bp Feature: domain Description: COG5659 Location: 206921 1 -2069577 bp Feature: gene Location: 2070370-2070675 bp Ori: KWX00876.1 Feature: domain Description: Transposase_mut Location: 2070463-2070631 bp Feature: domain Description: Transposase_mut Location: 2070463-2070631 bp Feature: gene Location: 2070697-2072142 bp Ori: KWX00877.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2071021-2071702 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2071 021 -2071 702 bp Feature: domain Description: GIIM Note: maturase Location: 2071777-2072005 bp Feature: domain Description: GIIM Note: maturase Location: 2071 777-2072005 bp Feature: gene Location: 2072758-2072892 bp Feature: gene Location: 2073163-2073924 bp Ori: KWX00879.1 Feature: domain Description: LZ_Tnp_IS481 Location: 2073166-2073352 bp Feature: domain Description: LZ_Tnp_IS481 Location: 20731 66-2073352 bp Feature: domain Description: rve Location: 2073499-2073907 bp Feature: domain Description: rve Location: 2073499-2073907 bp Feature: gene Location: 2133001-2133123 bp Feature: gene Location: 2133632-2134027 bp Ori: KWX00936.1 Feature: domain Description: YkfC Location: 2133686-2133914 bp Feature: domain Description: YkfC Location: 21 33686-21 3391 4 bp Feature: gene Location: 2134012-2135550 bp Ori: KWX00937.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2134015-2134636 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 3401 5-21 34636 bp Feature: domain Description: GIIM Note: maturase Location: 2134711-2134939 bp Feature: domain Description: GIIM Note: maturase Location: 21 3471 1 -21 34939 bp Feature: gene Location: 2135920-2136399 bp Feature: gene Location: 2136414-2137244 bp Feature: gene Location: 2141211-2141348 bp Feature: gene Location: 2143183-2143512 bp Ori: KWX00945.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 2143267-2143438 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 21 43267-21 43438 bp Feature: gene Location: 2143509-2144501 bp Ori: KWX00946.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2143512-2144082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 4351 2-21 44082 bp Feature: domain Description: GIIM Note: maturase Location: 2144166-2144379 bp Feature: domain Description: GIIM Note: maturase Location: 21 441 66-21 44379 bp Feature: gene Location: 2144970-2145875 bp Ori: KWX00947.1 Feature: domain Description: DDE_5 Location: 2145006-2145651 bp Feature: domain Description: DDE_5 Location: 21 45006-21 45651 bp Feature: gene Location: 2146197-2146388 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PTPS (pfam01242), NrdG (TIGR02491), RVT-CRISPR, YfmG (COG1262), COG5659 (SRSO17 transposase ), Transposase_mut (pfam00872), RVT-GII, GIIM (pfam08388), LZ_Tnp_IS481 (pfam13011), rve (pfam00665)
YkfC (COG3344), group_II_RT_mat (TIGR04416), DDE_5 (pfam13546)