myRT

myRT report for GCA_001544115.1_ASM154411v1

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Seq: BCPU01000072.1 Enterococcus raffinosus NBRC 100492 DNA, contig: ER1_CON0072_0001, whole genome shotgun sequence (14393 bp)
Overview 1 RT 1: 2427-9609 bp Neighborhood of RT #1 [2427, 9609] AAA_10 RVT-GII HNHc Feature: gene Location: 2427-4550 bp Feature: gene Location: 4555-5835 bp Feature: domain Description: AAA_10 Location: 4717-5800 bp Feature: domain Description: AAA_1 0 Location: 471 7-5800 bp Feature: gene Location: 5966-7672 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6263-6962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6263-6962 bp Feature: domain Description: HNHc Note: nucleases Location: 7517-7655 bp Feature: domain Description: HNHc Note: nucleases Location: 751 7-7655 bp Feature: gene Location: 8198-8347 bp Feature: gene Location: 8350-9609 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_10 (pfam12846), RVT-GII, HNHc (smart00507)

Seq: BCPU01000077.1 Enterococcus raffinosus NBRC 100492 DNA, contig: ER1_CON0077_0001, whole genome shotgun sequence (11655 bp)
Overview 1 RT 1: 6792-10310 bp Neighborhood of RT #1 [6792, 10345] Arm-DNA-bind_4 Phage_int_SAM_3 INT_ICEBs1_C_like YitT_membrane RVT-GII KOG4768 Relaxase Feature: gene Location: 6792-7934 bp Feature: domain Description: Arm-DNA-bind_4 Location: 6837-6966 bp Feature: domain Description: Arm-DNA-bind_4 Location: 6837-6966 bp Feature: domain Description: Phage_int_SAM_3 Location: 6993-7161 bp Feature: domain Description: Phage_int_SAM_3 Location: 6993-7161 bp Feature: domain Description: INT_ICEBs1_C_like Location: 7350-7878 bp Feature: domain Description: INT_ICEBs1_C_like Location: 7350-7878 bp Feature: gene Location: 8413-8541 bp Feature: domain Description: YitT_membrane Location: 8443-8536 bp Feature: domain Description: YitT_membrane Location: 8443-8536 bp Feature: gene Location: 8602-9264 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8686-9127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8686-912 7 bp Feature: gene Location: 9179-9451 bp Feature: domain Description: KOG4768 Location: 9203-9404 bp Feature: domain Description: KOG4768 Location: 92 03-9404 bp Feature: gene Location: 9983-10345 bp Feature: domain Description: Relaxase Location: 10013-10310 bp Feature: domain Description: Relaxase Location: 10013-10310 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_4 (pfam14657), Phage_int_SAM_3 (pfam14659), INT_ICEBs1_C_like (cd01189), YitT_membrane (pfam02588), RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase ), Relaxase (pfam03432)

Seq: BCPU01000089.1 Enterococcus raffinosus NBRC 100492 DNA, contig: ER1_CON0089_0001, whole genome shotgun sequence (6062 bp)
Overview 1 RT 1: 101-3990 bp Neighborhood of RT #1 [101, 3998] RVT-GII HNHc FtsK_SpoIIIE RelB_DinJ Feature: gene Location: 101-1975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 467-1163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 467-1163 bp Feature: domain Description: HNHc Note: nucleases Location: 1703-1862 bp Feature: domain Description: HNHc Note: nucleases Location: 1703 -1862 bp Feature: gene Location: 2569-3600 bp Feature: domain Description: FtsK_SpoIIIE Location: 3241-3481 bp Feature: domain Description: FtsK_SpoIIIE Location: 3 241-3 481 bp Feature: gene Location: 3654-3998 bp Feature: domain Description: RelB_DinJ Location: 3864-3990 bp Feature: domain Description: RelB_DinJ Location: 3 864-3 990 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), FtsK_SpoIIIE (pfam01580), RelB_DinJ (TIGR02384)