myRT

myRT report for GCA_001544475.2_ASM1544475v2

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Seq: FCNW02000133.1 Burkholderia humi Vandamme et al. 2013 isolate LMG 22934 genome assembly, contig: contig000133, whole genome shotgun sequence (3721 bp)
Overview 1 RT 1: 608-3648 bp Neighborhood of RT #1 [608, 3698] PinE Zn_ribbon_recom RVT-GII Feature: gene Location: 608-2449 bp Feature: domain Description: PinE Location: 650-1331 bp Feature: domain Description: PinE Location: 650-1 331 bp Feature: domain Description: Zn_ribbon_recom Location: 1604-1781 bp Feature: domain Description: Zn_ribbon_recom Location: 1 604-1 781 bp Feature: gene Location: 2586-2918 bp Feature: gene Location: 3270-3698 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3285-3648 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3285-3648 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PinE (COG1961), Zn_ribbon_recom (pfam13408)

Seq: FCNW02000010.1 Burkholderia humi Vandamme et al. 2013 isolate LMG 22934 genome assembly, contig: contig000010, whole genome shotgun sequence (167549 bp)
Overview 1 RT 1: 88810-96279 bp Neighborhood of RT #1 [88810, 96311] PRK10861 PRK10861 PRK05433 RVT_N RVT-GII GIIM HNHc DUF836 degP_htrA_DO Feature: gene Location: 88810-89703 bp Feature: domain Description: PRK10861 Location: 88819-89347 bp Feature: domain Description: PRK10861 Location: 88819-89347 bp Feature: domain Description: PRK10861 Location: 89542-89674 bp Feature: domain Description: PRK10861 Location: 89542 -89674 bp Feature: gene Location: 89758-91548 bp Feature: domain Description: PRK05433 Location: 89761-91546 bp Feature: domain Description: PRK05433 Location: 89761-91546 bp Feature: gene Location: 91712-93412 bp Feature: RT Description: RVT_N Location: 91769-92009 bp Feature: RT Description: RVT_N Location: 91769-92 009 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92057-92705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92 057-92 705 bp Feature: domain Description: GIIM Note: maturase Location: 92756-92990 bp Feature: domain Description: GIIM Note: maturase Location: 92 756-92 990 bp Feature: domain Description: HNHc Note: nucleases Location: 93191-93374 bp Feature: domain Description: HNHc Note: nucleases Location: 93191-93374 bp Feature: gene Location: 94511-94762 bp Feature: domain Description: DUF836 Location: 94526-94742 bp Feature: domain Description: DUF836 Location: 9452 6-94742 bp Feature: gene Location: 94770-96311 bp Feature: domain Description: degP_htrA_DO Location: 94878-96279 bp Feature: domain Description: degP_htrA_DO Location: 94878-962 79 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10861 (signal peptidase I), PRK05433 (GTP-binding protein LepA; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF836 (pfam05768), degP_htrA_DO (TIGR02037)

Seq: FCNW02000190.1 Burkholderia humi Vandamme et al. 2013 isolate LMG 22934 genome assembly, contig: contig000190, whole genome shotgun sequence (1234 bp)
Overview 1 RT 1: 399-957 bp Neighborhood of RT #1 [399, 1043] RVT-GII GIIM Feature: gene Location: 399-1043 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 405-660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 405-660 bp Feature: domain Description: GIIM Note: maturase Location: 738-957 bp Feature: domain Description: GIIM Note: maturase Location: 73 8-957 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: FCNW02000088.1 Burkholderia humi Vandamme et al. 2013 isolate LMG 22934 genome assembly, contig: contig000088, whole genome shotgun sequence (13821 bp)
Overview 1 RT 1: 879-6117 bp Neighborhood of RT #1 [879, 6117] MhpC RVT-GII dCache_1 Tar Feature: gene Location: 879-1784 bp Feature: domain Description: MhpC Location: 975-1776 bp Feature: domain Description: MhpC Location: 975-1776 bp Feature: gene Location: 2963-3307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3167-3305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3167-3305 bp Feature: gene Location: 3548-5383 bp Feature: domain Description: dCache_1 Location: 3665-4196 bp Feature: domain Description: dCache_1 Location: 3665-4 196 bp Feature: domain Description: Tar Location: 4256-5345 bp Feature: domain Description: Tar Location: 4 256-534 5 bp Feature: gene Location: 5884-6117 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, dCache_1 (pfam02743), Tar (COG0840)

Seq: FCNW02000059.1 Burkholderia humi Vandamme et al. 2013 isolate LMG 22934 genome assembly, contig: contig000059, whole genome shotgun sequence (30279 bp)
Overview 1 RT 1: 17243-24734 bp Neighborhood of RT #1 [17243, 24734] zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM IS5 Feature: gene Location: 17243-18421 bp Feature: domain Description: zf-IS66 Location: 17246-17345 bp Feature: domain Description: zf-IS66 Location: 17246-17345 bp Feature: domain Description: DDE_Tnp_IS66 Location: 17393-18248 bp Feature: domain Description: DDE_Tnp_IS66 Location: 17393-18248 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 18269-18380 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 18269-18380 bp Feature: gene Location: 18422-18664 bp Feature: gene Location: 20378-21688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20669-21332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20669-21332 bp Feature: domain Description: GIIM Note: maturase Location: 21401-21617 bp Feature: domain Description: GIIM Note: maturase Location: 21401-21617 bp Feature: gene Location: 22387-23373 bp Feature: domain Description: IS5 Location: 22579-23332 bp Feature: domain Description: IS5 Location: 225 79-23332 bp Feature: gene Location: 24156-24734 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), IS5 (COG3039)

Seq: FCNW02000081.1 Burkholderia humi Vandamme et al. 2013 isolate LMG 22934 genome assembly, contig: contig000081, whole genome shotgun sequence (16553 bp)
Overview 1 RT 1: 12456-15867 bp Neighborhood of RT #1 [12456, 16007] RVT-GII GIIM Recombinase Zn_ribbon_recom Resolvase Feature: gene Location: 12456-13106 bp Feature: gene Location: 13183-13404 bp Feature: gene Location: 13734-14318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13776-13962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13776 -1396 2 bp Feature: domain Description: GIIM Note: maturase Location: 14031-14235 bp Feature: domain Description: GIIM Note: maturase Location: 14031-14235 bp Feature: gene Location: 14278-15441 bp Feature: domain Description: Recombinase Location: 14296-14611 bp Feature: domain Description: Recombinase Location: 14296 -146 11 bp Feature: domain Description: Zn_ribbon_recom Location: 14656-14860 bp Feature: domain Description: Zn_ribbon_recom Location: 146 56 -1486 0 bp Feature: gene Location: 15420-16007 bp Feature: domain Description: Resolvase Location: 15429-15867 bp Feature: domain Description: Resolvase Location: 15429-1586 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), Resolvase (smart00857)

Seq: FCNW02000154.1 Burkholderia humi Vandamme et al. 2013 isolate LMG 22934 genome assembly, contig: contig000154, whole genome shotgun sequence (2018 bp)
Overview 1 RT 1: 97-1015 bp Neighborhood of RT #1 [97, 1371] RVT-GII Feature: gene Location: 97-1371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 325-1015 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 325-1015 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII