myRT

myRT report for GCA_001544535.2_ASM1544535v2

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Seq: FCON02000297.1 Burkholderia choica isolate LMG 22940 genome assembly, contig: contig000297, whole genome shotgun sequence (4901 bp)
Overview 1 RT 1: 576-3697 bp Neighborhood of RT #1 [576, 3753] DDE_Tnp_1 RVT_N RVT-GII YkfC HNH Feature: gene Location: 576-764 bp Feature: gene Location: 670-1308 bp Ori: SAL87516.1 Feature: domain Description: DDE_Tnp_1 Location: 730-1015 bp Feature: domain Description: DDE_Tnp_1 Location: 730-1 01 5 bp Feature: gene Location: 2050-3753 bp Ori: SAL87517.1 Feature: domain Description: RVT_N Location: 2104-2347 bp Feature: domain Description: RVT_N Location: 21 04-2347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2392-3031 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2392-3031 bp Feature: domain Description: YkfC Location: 3151-3346 bp Feature: domain Description: YkfC Location: 31 51 -3346 bp Feature: domain Description: HNH Note: nucleases Location: 3574-3697 bp Feature: domain Description: HNH Note: nucleases Location: 3574-3697 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844)

Seq: FCON02000086.1 Burkholderia choica isolate LMG 22940 genome assembly, contig: contig000086, whole genome shotgun sequence (31996 bp)
Overview 1 RT 1: 26126-30671 bp Neighborhood of RT #1 [26126, 31885] Prim-Pol AAA_25 RVT-UG19 Feature: gene Location: 26126-28357 bp Ori: SAL79725.1 Feature: domain Description: Prim-Pol Location: 26192-26618 bp Feature: domain Description: Prim-Pol Location: 2 6192 -2 6618 bp Feature: domain Description: AAA_25 Location: 27371-27899 bp Feature: domain Description: AAA_2 5 Location: 2 7371-2 7899 bp Feature: gene Location: 29318-29785 bp Feature: gene Location: 29825-31885 bp Ori: SAL79729.1 Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 30191-30671 bp Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 30191-30671 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Prim-Pol (smart00943), AAA_25 (pfam13481), RVT-UG19

Seq: FCON02000003.1 Burkholderia choica isolate LMG 22940 genome assembly, contig: contig000003, whole genome shotgun sequence (166925 bp)
Overview 1 RT 1: 57134-64638 bp Neighborhood of RT #1 [57134, 64667] degP_htrA_DO DUF836 RVT_N RVT-GII GIIM HNHc PRK05433 PRK10861 PRK10861 Feature: gene Location: 57134-58681 bp Ori: SAL16733.1 Feature: domain Description: degP_htrA_DO Location: 57242-58649 bp Feature: domain Description: degP_htrA_DO Location: 57242-58649 bp Feature: gene Location: 58691-58942 bp Ori: SAL16750.1 Feature: domain Description: DUF836 Location: 58706-58922 bp Feature: domain Description: DUF83 6 Location: 58706-58922 bp Feature: gene Location: 60041-61741 bp Ori: SAL16760.1 Feature: domain Description: RVT_N Location: 60098-60338 bp Feature: domain Description: RVT_N Location: 60098-603 3 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60386-61034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 603 86-6103 4 bp Feature: domain Description: GIIM Note: maturase Location: 61085-61319 bp Feature: domain Description: GIIM Note: maturase Location: 61085-613 19 bp Feature: domain Description: HNHc Note: nucleases Location: 61520-61703 bp Feature: domain Description: HNHc Note: nucleases Location: 61520-61703 bp Feature: gene Location: 61905-63695 bp Ori: SAL16773.1 Feature: domain Description: PRK05433 Location: 61908-63693 bp Feature: domain Description: PRK0543 3 Location: 61908-63 693 bp Feature: gene Location: 63774-64667 bp Ori: SAL16785.1 Feature: domain Description: PRK10861 Location: 63783-64311 bp Feature: domain Description: PRK10861 Location: 63 783 -643 11 bp Feature: domain Description: PRK10861 Location: 64506-64638 bp Feature: domain Description: PRK10861 Location: 64506-6463 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT degP_htrA_DO (TIGR02037), DUF836 (pfam05768), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK05433 (GTP-binding protein LepA; Provisional), PRK10861 (signal peptidase I)

Seq: FCON02000295.1 Burkholderia choica isolate LMG 22940 genome assembly, contig: contig000295, whole genome shotgun sequence (4962 bp)
Overview 1 RT 1: 998-4487 bp Neighborhood of RT #1 [998, 4564] RVT-GII GMP_PMI Feature: gene Location: 998-1360 bp Feature: gene Location: 1357-2865 bp Ori: SAL87492.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1783-2473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1783-24 73 bp Feature: gene Location: 3071-4564 bp Ori: SAL87494.1 Feature: domain Description: GMP_PMI Location: 3080-4487 bp Feature: domain Description: GMP_PMI Location: 3080-4 4 87 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GMP_PMI (TIGR01479)

Seq: FCON02000392.1 Burkholderia choica isolate LMG 22940 genome assembly, contig: contig000392, whole genome shotgun sequence (2004 bp)
Overview 1 RT 1: 697-1813 bp Neighborhood of RT #1 [697, 1926] RVT-GII GIIM Feature: gene Location: 697-1926 bp Ori: SAL88305.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 940-1561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 940-15 61 bp Feature: domain Description: GIIM Note: maturase Location: 1612-1813 bp Feature: domain Description: GIIM Note: maturase Location: 1612-1813 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)