myRT

myRT report for GCA_001544555.2_Burkholderia_udeis_LMG_27134

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Seq: FCOK02000056.1 Burkholderia udeis isolate LMG 27134 genome assembly, contig: contig000056, whole genome shotgun sequence (62925 bp)
Overview 1 RT 1: 23593-29626 bp Neighborhood of RT #1 [23593, 29652] CheY PRK09302 PRK09302 RVT_N RVT-GII GIIM HNHc DUF2968 Feature: gene Location: 23593-23949 bp Ori: SAP34768.1 Feature: domain Description: CheY Location: 23599-23938 bp Feature: domain Description: CheY Location: 23599-23938 bp Feature: gene Location: 23946-25586 bp Ori: SAP34769.1 Gene: kaiC_2 Feature: domain Description: PRK09302 Location: 24120-24597 bp Feature: domain Description: PRK09302 Location: 241 20-24597 bp Feature: domain Description: PRK09302 Location: 24642-25533 bp Feature: domain Description: PRK09302 Location: 24642-25533 bp Feature: gene Location: 26075-27778 bp Ori: SAP34770.1 Feature: domain Description: RVT_N Location: 26129-26372 bp Feature: domain Description: RVT_N Location: 261 29-26372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26417-27056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2641 7-27056 bp Feature: domain Description: GIIM Note: maturase Location: 27107-27341 bp Feature: domain Description: GIIM Note: maturase Location: 271 07-27341 bp Feature: domain Description: HNHc Note: nucleases Location: 27581-27722 bp Feature: domain Description: HNHc Note: nucleases Location: 27581 -27722 bp Feature: gene Location: 28466-28744 bp Feature: gene Location: 28951-29652 bp Ori: SAP34772.1 Feature: domain Description: DUF2968 Location: 29116-29626 bp Feature: domain Description: DUF2968 Location: 291 1 6-29626 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CheY (COG0784), PRK09302 (circadian clock protein KaiC; Reviewed), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF2968 (pfam11180)

Seq: FCOK02000015.1 Burkholderia udeis isolate LMG 27134 genome assembly, contig: contig000015, whole genome shotgun sequence (139735 bp)
Overview 1 RT 1: 29916-35936 bp Neighborhood of RT #1 [29916, 35971] Y2_Tnp RVT_N RVT-GII YkfC HNH LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 TnpB_IS66 Feature: gene Location: 29916-30071 bp Feature: gene Location: 30380-31279 bp Ori: SAL31988.1 Feature: domain Description: Y2_Tnp Location: 30521-31079 bp Feature: domain Description: Y2 _Tnp Location: 3052 1-31079 bp Feature: gene Location: 31824-33527 bp Ori: SAL31993.1 Feature: domain Description: RVT_N Location: 31878-32121 bp Feature: domain Description: RVT_N Location: 31878-32 12 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32166-32805 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 166-32 805 bp Feature: domain Description: YkfC Location: 32922-33108 bp Feature: domain Description: YkfC Location: 32 92 2 -33108 bp Feature: domain Description: HNH Note: nucleases Location: 33348-33471 bp Feature: domain Description: HNH Note: nucleases Location: 33348-33471 bp Feature: gene Location: 33818-35584 bp Ori: SAL32000.1 Feature: domain Description: LZ_Tnp_IS66 Location: 33959-34172 bp Feature: domain Description: LZ_Tnp_IS66 Location: 33959-34172 bp Feature: domain Description: zf-IS66 Location: 34196-34328 bp Feature: domain Description: zf-IS66 Location: 34196-3432 8 bp Feature: domain Description: DDE_Tnp_IS66 Location: 34376-35243 bp Feature: domain Description: DDE_Tnp_IS66 Location: 34376-352 43 bp Feature: gene Location: 35615-35971 bp Ori: SAL32005.1 Feature: domain Description: TnpB_IS66 Location: 35642-35936 bp Feature: domain Description: TnpB_IS66 Location: 35642 -35936 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Y2_Tnp (pfam04986), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), TnpB_IS66 (pfam05717)

Seq: FCOK02000165.1 Burkholderia udeis isolate LMG 27134 genome assembly, contig: contig000165, whole genome shotgun sequence (3747 bp)
Overview 1 RT 1: 190-3490 bp Neighborhood of RT #1 [190, 3657] RVT-GII GIIM RVT-GII GIIM Feature: gene Location: 190-315 bp Feature: gene Location: 418-1788 bp Ori: SAL74677.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 745-1366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 745-13 66 bp Feature: domain Description: GIIM Note: maturase Location: 1417-1621 bp Feature: domain Description: GIIM Note: maturase Location: 1417-1621 bp Feature: gene Location: 2287-3657 bp Ori: SAL74681.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2614-3235 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2614-3 23 5 bp Feature: domain Description: GIIM Note: maturase Location: 3286-3490 bp Feature: domain Description: GIIM Note: maturase Location: 3 286-3 490 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: FCOK02000018.1 Burkholderia udeis isolate LMG 27134 genome assembly, contig: contig000018, whole genome shotgun sequence (134650 bp)
Overview 1 RT 1: 45922-50946 bp Neighborhood of RT #1 [45922, 50993] Rve RVT-GII Rve Feature: gene Location: 45922-46617 bp Feature: gene Location: 47123-47506 bp Ori: SAL34185.1 Feature: domain Description: Rve Location: 47162-47408 bp Feature: domain Description: Rve Location: 4 7162-4 74 08 bp Feature: gene Location: 48348-49433 bp Ori: SAL34194.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48618-49308 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 8618-4 9308 bp Feature: gene Location: 49753-50286 bp Feature: gene Location: 50274-50993 bp Ori: SAL34204.1 Feature: domain Description: Rve Location: 50316-50946 bp Feature: domain Description: Rve Location: 50316-5094 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), RVT-GII

Seq: FCOK02000121.1 Burkholderia udeis isolate LMG 27134 genome assembly, contig: contig000121, whole genome shotgun sequence (17538 bp)
Overview 1 RT 1: 998-4312 bp Neighborhood of RT #1 [998, 4312] PDC_hydrolase gram_neg_porins RVT-GII Feature: gene Location: 998-1969 bp Ori: SAL72365.1 Feature: domain Description: PDC_hydrolase Location: 1130-1949 bp Feature: domain Description: PDC_hydrolase Location: 1130-1949 bp Feature: gene Location: 2417-3307 bp Ori: SAL72371.1 Feature: domain Description: gram_neg_porins Location: 2420-3305 bp Feature: domain Description: gram_neg_porins Location: 2420-3305 bp Feature: gene Location: 3667-3876 bp Ori: SAL72375.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3694-3859 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3694-385 9 bp Feature: gene Location: 3986-4084 bp Feature: gene Location: 4133-4312 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PDC_hydrolase (cd01311), gram_neg_porins (cd00342), RVT-GII