myRT

myRT report for GCA_001544875.2_Burkholderia_sp._LMG_29322

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Seq: FCOA02000001.1 Burkholderia hypogeia type strain LMG 29322 genome assembly, contig: contig000001, whole genome shotgun sequence (710637 bp)
Overview 1 RT 1: 223159-229540 bp 2 RT 2: 533189-538397 bp Neighborhood of RT #1 [223159, 229599] COG2928 COG2331 RVT-GII GIIM HNH TPMT ubiB Neighborhood of RT #2 [533189, 538397] PinE RVT-UG12 xerS INT_C_like_6 Feature: gene Location: 223159-223821 bp Ori: SAK40099.1 Feature: domain Description: COG2928 Location: 223174-223780 bp Feature: domain Description: COG2928 Location: 2231 74-223780 bp Feature: gene Location: 223978-224343 bp Ori: SAK40105.1 Feature: domain Description: COG2331 Location: 223981-224197 bp Feature: domain Description: COG2331 Location: 223981 -2241 97 bp Feature: gene Location: 224475-225773 bp Ori: SAK40112.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 224478-225066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 224478-225066 bp Feature: domain Description: GIIM Note: maturase Location: 225117-225351 bp Feature: domain Description: GIIM Note: maturase Location: 2251 1 7-225351 bp Feature: domain Description: HNH Note: nucleases Location: 225603-225738 bp Feature: domain Description: HNH Note: nucleases Location: 225603-225738 bp Feature: gene Location: 227394-228011 bp Ori: SAK40117.1 Feature: domain Description: TPMT Location: 227454-228006 bp Feature: domain Description: TPMT Location: 227454-228006 bp Feature: gene Location: 228025-229599 bp Ori: SAK40124.1 Feature: domain Description: ubiB Location: 228028-229540 bp Feature: domain Description: ubiB Location: 228028-229540 bp Feature: gene Location: 533189-533800 bp Ori: SAK41802.1 Feature: domain Description: PinE Location: 533204-533762 bp Feature: domain Description: PinE Location: 533204-533762 bp Feature: gene Location: 533971-534342 bp Feature: gene Location: 534825-536552 bp Ori: SAK41818.1 Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 535173-535614 bp Feature: RT Description: RVT-UG1 2 Note: UG1 2 RT Location: 5351 73-53561 4 bp Feature: gene Location: 536737-537696 bp Ori: SAK41828.1 Feature: domain Description: xerS Location: 536941-537082 bp Feature: domain Description: xerS Location: 536941 -537082 bp Feature: domain Description: INT_C_like_6 Location: 537136-537679 bp Feature: domain Description: INT_C_like_6 Location: 5371 36-537679 bp Feature: gene Location: 537693-538397 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2928 (Uncharacterized membrane protein ), COG2331 (Predicted nucleic acid-binding protein, contains Zn-ribbon domain ), RVT-GII, GIIM (pfam08388), HNH (pfam01844), TPMT (pfam05724), ubiB (PRK04750), PinE (COG1961), RVT-UG12, xerS (PRK05084)
INT_C_like_6 (cd01196)