myRT

myRT report for GCA_001544975.2_ASM154497v2

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Seq: FCOG02000363.1 Burkholderia arationis type strain LMG 29324 genome assembly, contig: contig000363, whole genome shotgun sequence (2286 bp)
Overview 1 RT 1: 343-2080 bp Neighborhood of RT #1 [343, 2127] RVT_N RVT-GII IS5 Feature: gene Location: 343-984 bp Ori: SAL07895.1 Feature: domain Description: RVT_N Location: 418-655 bp Feature: domain Description: RVT_N Location: 41 8-655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 706-961 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 706-961 bp Feature: gene Location: 1537-2127 bp Ori: SAL07896.1 Feature: domain Description: IS5 Location: 1714-2080 bp Feature: domain Description: IS5 Location: 1 71 4-2080 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, IS5 (COG3039)

Seq: FCOG02000073.1 Burkholderia arationis type strain LMG 29324 genome assembly, contig: contig000073, whole genome shotgun sequence (30350 bp)
Overview 1 RT 1: 439-4263 bp Neighborhood of RT #1 [439, 4481] RVT-GII GIIM Phage_int_SAM_4 INT_IntI_C Zn_Tnp_IS91 Y2_Tnp Feature: gene Location: 439-1776 bp Ori: SAL00073.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 790-1411 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 790-1411 bp Feature: domain Description: GIIM Note: maturase Location: 1462-1675 bp Feature: domain Description: GIIM Note: maturase Location: 1462 -1675 bp Feature: gene Location: 2386-3264 bp Ori: SAL00081.1 Feature: domain Description: Phage_int_SAM_4 Location: 2398-2644 bp Feature: domain Description: Phage_int_SAM_4 Location: 2 398-2 644 bp Feature: domain Description: INT_IntI_C Location: 2680-3169 bp Feature: domain Description: INT_IntI_C Location: 2 680-3169 bp Feature: gene Location: 3273-4481 bp Ori: SAL00086.1 Feature: domain Description: Zn_Tnp_IS91 Location: 3303-3579 bp Feature: domain Description: Zn_Tnp_IS91 Location: 3303-3579 bp Feature: domain Description: Y2_Tnp Location: 3705-4263 bp Feature: domain Description: Y2 _Tnp Location: 3705-42 63 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Phage_int_SAM_4 (pfam13495), INT_IntI_C (cd01193), Zn_Tnp_IS91 (pfam14319), Y2_Tnp (pfam04986)

Seq: FCOG02000290.1 Burkholderia arationis type strain LMG 29324 genome assembly, contig: contig000290, whole genome shotgun sequence (3763 bp)
Overview 1 RT 1: 102-3433 bp Neighborhood of RT #1 [102, 3672] PHA02517 Tra8 Tra8 Tra8 RVT-GII GIIM Feature: gene Location: 102-437 bp Ori: SAL07627.1 Feature: domain Description: PHA02517 Location: 132-405 bp Feature: domain Description: PHA02517 Location: 13 2-405 bp Feature: gene Location: 445-1815 bp Ori: SAL07628.1 Feature: domain Description: Tra8 Location: 688-943 bp Feature: domain Description: Tra8 Location: 688-943 bp Feature: domain Description: Tra8 Location: 1045-1405 bp Feature: domain Description: Tra8 Location: 1045-1405 bp Feature: domain Description: Tra8 Location: 1465-1798 bp Feature: domain Description: Tra8 Location: 1465-1798 bp Feature: gene Location: 2140-3672 bp Ori: SAL07629.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2413-3151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2413 -3 151 bp Feature: domain Description: GIIM Note: maturase Location: 3259-3433 bp Feature: domain Description: GIIM Note: maturase Location: 3 259-3 43 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), Tra8 (COG2826), RVT-GII, GIIM (pfam08388)

Seq: FCOG02000045.1 Burkholderia arationis type strain LMG 29324 genome assembly, contig: contig000045, whole genome shotgun sequence (52452 bp)
Overview 1 RT 1: 49156-51524 bp Neighborhood of RT #1 [49156, 51931] COG4420 RVT_N RVT-GII GIIM Feature: gene Location: 49156-49704 bp Ori: SAK90784.1 Feature: domain Description: COG4420 Location: 49261-49648 bp Feature: domain Description: COG4 4 20 Location: 4 9261-4 964 8 bp Feature: gene Location: 50095-50277 bp Feature: gene Location: 50264-51931 bp Ori: SAK90804.1 Feature: domain Description: RVT_N Location: 50309-50552 bp Feature: domain Description: RVT_N Location: 50309-50552 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50597-51239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50597-51239 bp Feature: domain Description: GIIM Note: maturase Location: 51290-51524 bp Feature: domain Description: GIIM Note: maturase Location: 51290-51524 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4420 (Uncharacterized membrane protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: FCOG02000535.1 Burkholderia arationis type strain LMG 29324 genome assembly, contig: contig000535, whole genome shotgun sequence (795 bp)
Overview 1 RT 1: 184-697 bp Neighborhood of RT #1 [184, 768] RVT-GII GIIM Feature: gene Location: 184-768 bp Ori: SAL08110.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 238-412 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 238-412 bp Feature: domain Description: GIIM Note: maturase Location: 481-697 bp Feature: domain Description: GIIM Note: maturase Location: 481-697 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: FCOG02000226.1 Burkholderia arationis type strain LMG 29324 genome assembly, contig: contig000226, whole genome shotgun sequence (6141 bp)
Overview 1 RT 1: 337-4719 bp Neighborhood of RT #1 [337, 4760] HTH_32 DDE_3 RVT-GII GIIM AraC Feature: gene Location: 337-1422 bp Ori: SAL07138.1 Feature: domain Description: HTH_32 Location: 520-733 bp Feature: domain Description: HTH_32 Location: 520-733 bp Feature: domain Description: DDE_3 Location: 856-1291 bp Feature: domain Description: DDE_3 Location: 856 -1291 bp Feature: gene Location: 1419-1670 bp Feature: gene Location: 1936-3243 bp Ori: SAL07141.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2191-2842 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2191-2842 bp Feature: domain Description: GIIM Note: maturase Location: 2926-3151 bp Feature: domain Description: GIIM Note: maturase Location: 2926 -3151 bp Feature: gene Location: 3771-4760 bp Ori: SAL07143.1 Feature: domain Description: AraC Location: 4374-4719 bp Feature: domain Description: AraC Location: 4374-4719 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_32 (pfam13565), DDE_3 (pfam13358), RVT-GII, GIIM (pfam08388), AraC (COG2207)

Seq: FCOG02000332.1 Burkholderia arationis type strain LMG 29324 genome assembly, contig: contig000332, whole genome shotgun sequence (2713 bp)
Overview 1 RT 1: 285-1932 bp Neighborhood of RT #1 [285, 1997] RVT_N RVT-GII YkfC HNH Feature: gene Location: 285-1997 bp Ori: SAL07815.1 Feature: domain Description: RVT_N Location: 339-582 bp Feature: domain Description: RVT_N Location: 339-582 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 627-1266 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 627 -1266 bp Feature: domain Description: YkfC Location: 1383-1569 bp Feature: domain Description: YkfC Location: 1383-1569 bp Feature: domain Description: HNH Note: nucleases Location: 1809-1932 bp Feature: domain Description: HNH Note: nucleases Location: 1809-1932 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844)

Seq: FCOG02000285.1 Burkholderia arationis type strain LMG 29324 genome assembly, contig: contig000285, whole genome shotgun sequence (3922 bp)
Overview 1 RT 1: 59-3132 bp Neighborhood of RT #1 [59, 3524] RVT-GII RVT-GII Feature: gene Location: 59-1567 bp Ori: SAL07597.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 485-1175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48 5-1175 bp Feature: gene Location: 1564-1926 bp Feature: gene Location: 2016-3524 bp Ori: SAL07599.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2442-3132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2442-3132 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: FCOG02000351.1 Burkholderia arationis type strain LMG 29324 genome assembly, contig: contig000351, whole genome shotgun sequence (2513 bp)
Overview 1 RT 1: 295-1965 bp Neighborhood of RT #1 [295, 2189] RVT_N RVT-GII GIIM Feature: gene Location: 295-546 bp Feature: gene Location: 687-2189 bp Ori: SAL07870.1 Feature: domain Description: RVT_N Location: 750-993 bp Feature: domain Description: RVT_N Location: 750-9 9 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1038-1680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1038-1680 bp Feature: domain Description: GIIM Note: maturase Location: 1731-1965 bp Feature: domain Description: GIIM Note: maturase Location: 1731-19 65 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: FCOG02000354.1 Burkholderia arationis type strain LMG 29324 genome assembly, contig: contig000354, whole genome shotgun sequence (2444 bp)
Overview 1 RT 1: 134-1869 bp Neighborhood of RT #1 [134, 1934] RVT-GII IstB_IS21 Feature: gene Location: 134-520 bp Ori: SAL07875.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 149-443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 149-443 bp Feature: gene Location: 872-1204 bp Feature: gene Location: 1416-1934 bp Ori: SAL07877.1 Feature: domain Description: IstB_IS21 Location: 1437-1869 bp Feature: domain Description: IstB_IS21 Location: 1437-1869 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, IstB_IS21 (pfam01695)

Seq: FCOG02000008.1 Burkholderia arationis type strain LMG 29324 genome assembly, contig: contig000008, whole genome shotgun sequence (154274 bp)
Overview 1 RT 1: 62586-70456 bp Neighborhood of RT #1 [62586, 70458] pgsA uvrC RVT_N RVT-GII GIIM HNHc EarP PRK00529 Feature: gene Location: 62586-63182 bp Ori: SAK55525.1 Feature: domain Description: pgsA Location: 62595-63159 bp Feature: domain Description: pgsA Location: 62595-63159 bp Feature: gene Location: 63288-65444 bp Ori: SAK55533.1 Feature: domain Description: uvrC Location: 63321-65442 bp Feature: domain Description: uvrC Location: 63321-65442 bp Feature: gene Location: 65614-67332 bp Ori: SAK55540.1 Feature: domain Description: RVT_N Location: 65671-65914 bp Feature: domain Description: RVT_N Location: 65671-65914 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65959-66607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65959-66607 bp Feature: domain Description: GIIM Note: maturase Location: 66661-66892 bp Feature: domain Description: GIIM Note: maturase Location: 66661-66892 bp Feature: domain Description: HNHc Note: nucleases Location: 67135-67276 bp Feature: domain Description: HNHc Note: nucleases Location: 67135-67276 bp Feature: gene Location: 68526-69728 bp Ori: SAK55548.1 Feature: domain Description: EarP Location: 68562-69660 bp Feature: domain Description: EarP Location: 68562-69660 bp Feature: gene Location: 69901-70458 bp Ori: SAK55557.1 Feature: domain Description: PRK00529 Location: 69904-70456 bp Feature: domain Description: PRK00529 Location: 69904-70456 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pgsA (TIGR00560), uvrC (TIGR00194), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), EarP (TIGR03837), PRK00529 (elongation factor P; Validated)

Seq: FCOG02000049.1 Burkholderia arationis type strain LMG 29324 genome assembly, contig: contig000049, whole genome shotgun sequence (46736 bp)
Overview 1 RT 1: 2723-11732 bp Neighborhood of RT #1 [2723, 11758] PRK06958 MFS_YajR_like RVT_N RVT-GII GIIM HNH uvrA PerM Feature: gene Location: 2723-3262 bp Ori: SAK92228.1 Feature: domain Description: PRK06958 Location: 2726-3260 bp Feature: domain Description: PRK06958 Location: 2726-3260 bp Feature: gene Location: 3388-4545 bp Ori: SAK92233.1 Feature: domain Description: MFS_YajR_like Location: 3409-4507 bp Feature: domain Description: MFS_YajR_like Location: 3409-4507 bp Feature: gene Location: 4909-6609 bp Ori: SAK92238.1 Feature: domain Description: RVT_N Location: 4966-5209 bp Feature: domain Description: RVT_N Location: 4966-5209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5254-5902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5254-5902 bp Feature: domain Description: GIIM Note: maturase Location: 5956-6187 bp Feature: domain Description: GIIM Note: maturase Location: 5956-6187 bp Feature: domain Description: HNH Note: nucleases Location: 6439-6574 bp Feature: domain Description: HNH Note: nucleases Location: 6439-6574 bp Feature: gene Location: 7651-10524 bp Ori: SAK92251.1 Feature: domain Description: uvrA Location: 7657-10504 bp Feature: domain Description: uvrA Location: 7657-10504 bp Feature: gene Location: 10607-11758 bp Ori: SAK92260.1 Feature: domain Description: PerM Location: 10778-11732 bp Feature: domain Description: PerM Location: 10778-11732 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06958 (single-stranded DNA-binding protein; Provisional), MFS_YajR_like (cd17472), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), uvrA (PRK00349), PerM (COG0628)