myRT

myRT report for GCA_001545615.1_ASM154561v1

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Seq: LNLN01000316.1 Enterococcus faecium strain VRE-1400325 Contig_82, whole genome shotgun sequence (14351 bp)
Overview 1 RT 1: 6048-11588 bp Neighborhood of RT #1 [6048, 11614] RelB_DinJ FtsK_SpoIIIE RVT-GII HNHc FtsK Dcm Feature: gene Location: 6048-6392 bp Ori: KWY24328.1 Feature: domain Description: RelB_DinJ Location: 6258-6384 bp Feature: domain Description: RelB_DinJ Location: 6258-6384 bp Feature: gene Location: 6461-7444 bp Feature: domain Description: FtsK_SpoIIIE Location: 7118-7358 bp Feature: domain Description: FtsK_SpoIIIE Location: 71 1 8-7358 bp Feature: gene Location: 8143-9945 bp Ori: KWY24329.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8437-9133 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8437-91 33 bp Feature: domain Description: HNHc Note: nucleases Location: 9673-9832 bp Feature: domain Description: HNHc Note: nucleases Location: 9673-9832 bp Feature: gene Location: 10047-10427 bp Ori: KWY24324.1 Feature: domain Description: FtsK Location: 10062-10302 bp Feature: domain Description: FtsK Location: 1 0062-1 0302 bp Feature: gene Location: 10472-11614 bp Ori: KWY24325.1 Feature: domain Description: Dcm Location: 10475-11588 bp Feature: domain Description: Dcm Location: 1 0475-1 1 588 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RelB_DinJ (TIGR02384), FtsK_SpoIIIE (pfam01580), RVT-GII, HNHc (smart00507), FtsK (COG1674), Dcm (COG0270)

Seq: LNLN01000333.1 Enterococcus faecium strain VRE-1400325 Contig_97, whole genome shotgun sequence (7752 bp)
Overview 1 RT 1: 1-4359 bp Neighborhood of RT #1 [1, 4388] T4SS-DNA_transf RVT-GII Intron_maturas2 HNHc DUF3801 Feature: gene Location: 1-932 bp Feature: domain Description: T4SS-DNA_transf Location: 31-925 bp Feature: domain Description: T4SS-DNA_transf Location: 31-92 5 bp Feature: gene Location: 1038-2855 bp Ori: KWY23609.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1302-2121 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1302 -2 12 1 bp Feature: domain Description: Intron_maturas2 Location: 2193-2496 bp Feature: domain Description: Intron_maturas2 Location: 2 193-2 496 bp Feature: domain Description: HNHc Note: nucleases Location: 2676-2820 bp Feature: domain Description: HNHc Note: nucleases Location: 2 676-2 82 0 bp Feature: gene Location: 3415-3915 bp Feature: gene Location: 3912-4388 bp Ori: KWY23611.1 Feature: domain Description: DUF3801 Location: 3969-4359 bp Feature: domain Description: DUF3801 Location: 3969-4359 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT T4SS-DNA_transf (pfam02534), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF3801 (pfam12687)

Seq: LNLN01000080.1 Enterococcus faecium strain VRE-1400325 Contig_170, whole genome shotgun sequence (2993 bp)
Overview 1 RT 1: 1214-2874 bp Neighborhood of RT #1 [1214, 2993] ArdA RVT-GII HNHc Feature: gene Location: 1214-1714 bp Ori: KWY30714.1 Feature: domain Description: ArdA Location: 1232-1703 bp Feature: domain Description: ArdA Location: 123 2-1703 bp Feature: gene Location: 1727-1951 bp Feature: gene Location: 2055-2993 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2061-2154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2061-2154 bp Feature: domain Description: HNHc Note: nucleases Location: 2709-2874 bp Feature: domain Description: HNHc Note: nucleases Location: 2709-2874 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdA (pfam07275), RVT-GII, HNHc (smart00507)

Seq: LNLN01000256.1 Enterococcus faecium strain VRE-1400325 Contig_52, whole genome shotgun sequence (24515 bp)
Overview 1 RT 1: 18353-24223 bp Neighborhood of RT #1 [18353, 24234] PRK09362 RVT-GII GIIM Adenylsuccinate_lyase_1 PRK06019 Feature: gene Location: 18353-19081 bp Ori: KWY25867.1 Feature: domain Description: PRK09362 Location: 18356-19058 bp Feature: domain Description: PRK09362 Location: 18356-19058 bp Feature: gene Location: 19337-19714 bp Feature: gene Location: 20283-21671 bp Ori: KWY25869.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20604-21219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20604 -21219 bp Feature: domain Description: GIIM Note: maturase Location: 21276-21492 bp Feature: domain Description: GIIM Note: maturase Location: 21276-214 92 bp Feature: gene Location: 21793-23088 bp Ori: KWY25870.1 Feature: domain Description: Adenylsuccinate_lyase_1 Location: 21805-23074 bp Feature: domain Description: Adenylsuccinate_lyase_1 Location: 21805-23074 bp Feature: gene Location: 23101-24234 bp Ori: KWY25871.1 Feature: domain Description: PRK06019 Location: 23134-24223 bp Feature: domain Description: PRK06019 Location: 23134 -24 223 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09362 (phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed), RVT-GII, GIIM (pfam08388), Adenylsuccinate_lyase_1 (cd01360), PRK06019 (phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed)

Seq: LNLN01000239.1 Enterococcus faecium strain VRE-1400325 Contig_37, whole genome shotgun sequence (18071 bp)
Overview 1 RT 1: 2-5907 bp Neighborhood of RT #1 [2, 5984] NT_2-5OAS_ClassI-CCAase ArdA RVT-GII HNHc DUF3789 HTH_XRE Rol_Rep_N Rep_trans Feature: gene Location: 2-1039 bp Ori: KWY26641.1 Feature: domain Description: NT_2-5OAS_ClassI-CCAase Location: 95-512 bp Feature: domain Description: NT_2-5 OAS_ClassI-CCAase Location: 95 -5 12 bp Feature: gene Location: 1166-1669 bp Ori: KWY26642.1 Feature: domain Description: ArdA Location: 1184-1655 bp Feature: domain Description: ArdA Location: 1184-165 5 bp Feature: gene Location: 2010-3920 bp Ori: KWY26643.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2343-3081 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2343-3081 bp Feature: domain Description: HNHc Note: nucleases Location: 3636-3801 bp Feature: domain Description: HNHc Note: nucleases Location: 3636-3801 bp Feature: gene Location: 4666-4785 bp Ori: KWY26644.1 Feature: domain Description: DUF3789 Location: 4675-4768 bp Feature: domain Description: DUF3789 Location: 4675 -4768 bp Feature: gene Location: 4800-5984 bp Ori: KWY26645.1 Feature: domain Description: HTH_XRE Location: 4830-4974 bp Feature: domain Description: HTH_XRE Location: 4830-4974 bp Feature: domain Description: Rol_Rep_N Location: 5007-5271 bp Feature: domain Description: Rol_Rep_N Location: 5 007-5 271 bp Feature: domain Description: Rep_trans Location: 5295-5907 bp Feature: domain Description: Rep_trans Location: 5 295 -5 907 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NT_2-5OAS_ClassI-CCAase (cd05400), ArdA (pfam07275), RVT-GII, HNHc (smart00507), DUF3789 (pfam12664), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486)