myRT

myRT report for GCA_001545775.1_ASM154577v1

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Seq: LNLS01000169.1 Enterococcus faecium strain VRE-1401318 Contig_52, whole genome shotgun sequence (9239 bp)
Overview 1 RT 1: 4850-9233 bp Neighborhood of RT #1 [4850, 9239] DUF3801 RVT-GII Intron_maturas2 HNHc T4SS-DNA_transf Feature: gene Location: 4850-5326 bp Feature: domain Description: DUF3801 Location: 4907-5297 bp Feature: domain Description: DUF3801 Location: 4907-5297 bp Feature: gene Location: 5323-5823 bp Feature: gene Location: 6383-8200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6647-7466 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6647-7466 bp Feature: domain Description: Intron_maturas2 Location: 7538-7841 bp Feature: domain Description: Intron_maturas2 Location: 7538-7841 bp Feature: domain Description: HNHc Note: nucleases Location: 8021-8165 bp Feature: domain Description: HNHc Note: nucleases Location: 8021 -81 65 bp Feature: gene Location: 8306-9239 bp Feature: domain Description: T4SS-DNA_transf Location: 8336-9233 bp Feature: domain Description: T4SS-DNA_transf Location: 8336-9233 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3801 (pfam12687), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), T4SS-DNA_transf (pfam02534)

Seq: LNLS01000036.1 Enterococcus faecium strain VRE-1401318 Contig_13, whole genome shotgun sequence (41648 bp)
Overview 1 RT 1: 26580-37491 bp Neighborhood of RT #1 [26580, 37499] ArdA RVT-GII HNHc DUF3789 HTH_XRE Rol_Rep_N Rep_trans Dcm FtsK RVT-GII HNHc FtsK_SpoIIIE RelB_DinJ Feature: gene Location: 26580-27083 bp Feature: domain Description: ArdA Location: 26598-27069 bp Feature: domain Description: ArdA Location: 2 6598-2 7069 bp Feature: gene Location: 27096-27320 bp Feature: gene Location: 27424-29334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27757-28495 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 7757-2 8495 bp Feature: domain Description: HNHc Note: nucleases Location: 29050-29215 bp Feature: domain Description: HNHc Note: nucleases Location: 2 9050-2 92 15 bp Feature: gene Location: 30104-30199 bp Feature: domain Description: DUF3789 Location: 30113-30197 bp Feature: domain Description: DUF3789 Location: 30113-30197 bp Feature: gene Location: 30214-31398 bp Feature: domain Description: HTH_XRE Location: 30244-30388 bp Feature: domain Description: HTH_XRE Location: 302 44-30388 bp Feature: domain Description: Rol_Rep_N Location: 30421-30685 bp Feature: domain Description: Rol_Rep_N Location: 3042 1-30685 bp Feature: domain Description: Rep_trans Location: 30709-31321 bp Feature: domain Description: Rep_trans Location: 30709-3132 1 bp Feature: gene Location: 31933-33075 bp Feature: domain Description: Dcm Location: 31936-33049 bp Feature: domain Description: Dcm Location: 31936-33049 bp Feature: gene Location: 33120-33500 bp Feature: domain Description: FtsK Location: 33135-33375 bp Feature: domain Description: FtsK Location: 33135-33375 bp Feature: gene Location: 33602-35404 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33896-34592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33896-34592 bp Feature: domain Description: HNHc Note: nucleases Location: 35132-35291 bp Feature: domain Description: HNHc Note: nucleases Location: 35132 -352 91 bp Feature: gene Location: 36103-37086 bp Feature: domain Description: FtsK_SpoIIIE Location: 36760-37000 bp Feature: domain Description: FtsK_SpoIIIE Location: 36760-37000 bp Feature: gene Location: 37155-37499 bp Feature: domain Description: RelB_DinJ Location: 37365-37491 bp Feature: domain Description: RelB_DinJ Location: 37365-37491 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdA (pfam07275), RVT-GII, HNHc (smart00507), DUF3789 (pfam12664), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), Dcm (COG0270), FtsK (COG1674), FtsK_SpoIIIE (pfam01580)
RelB_DinJ (TIGR02384)

Seq: LNLS01000206.1 Enterococcus faecium strain VRE-1401318 Contig_82, whole genome shotgun sequence (15253 bp)
Overview 1 RT 1: 1-3004 bp Neighborhood of RT #1 [1, 3081] RVT-GII DUF3789 HTH_XRE Rol_Rep_N Rep_trans Feature: gene Location: 1-1017 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334-991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 4-991 bp Feature: gene Location: 1763-1882 bp Feature: domain Description: DUF3789 Location: 1772-1865 bp Feature: domain Description: DUF3 789 Location: 1772-1865 bp Feature: gene Location: 1897-3081 bp Feature: domain Description: HTH_XRE Location: 1927-2071 bp Feature: domain Description: HTH_XRE Location: 1927-2071 bp Feature: domain Description: Rol_Rep_N Location: 2104-2368 bp Feature: domain Description: Rol_Rep_N Location: 2104-23 68 bp Feature: domain Description: Rep_trans Location: 2392-3004 bp Feature: domain Description: Rep_trans Location: 23 92-3 004 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DUF3789 (pfam12664), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486)

Seq: LNLS01000188.1 Enterococcus faecium strain VRE-1401318 Contig_7, whole genome shotgun sequence (77530 bp)
Overview 1 RT 1: 57653-63523 bp Neighborhood of RT #1 [57653, 63534] PRK09362 RVT-GII GIIM Adenylsuccinate_lyase_1 PRK06019 Feature: gene Location: 57653-58381 bp Feature: domain Description: PRK09362 Location: 57656-58358 bp Feature: domain Description: PRK09362 Location: 57656-58358 bp Feature: gene Location: 58637-59014 bp Feature: gene Location: 59583-60971 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59904-60519 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59904 -60519 bp Feature: domain Description: GIIM Note: maturase Location: 60576-60792 bp Feature: domain Description: GIIM Note: maturase Location: 60576-60792 bp Feature: gene Location: 61093-62388 bp Feature: domain Description: Adenylsuccinate_lyase_1 Location: 61105-62374 bp Feature: domain Description: Adenylsuccinate_lyase_1 Location: 61105-62374 bp Feature: gene Location: 62401-63534 bp Feature: domain Description: PRK06019 Location: 62434-63523 bp Feature: domain Description: PRK06019 Location: 624 34 -63523 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09362 (phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed), RVT-GII, GIIM (pfam08388), Adenylsuccinate_lyase_1 (cd01360), PRK06019 (phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed)