myRT

myRT report for GCA_001545955.1_ASM154595v1

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Seq: LNLH01000091.1 Enterococcus faecium strain VRE-1300899 Contig_43, whole genome shotgun sequence (17312 bp)
Overview 1 RT 1: 3072-8792 bp Neighborhood of RT #1 [3072, 8821] Tra8 RVT-AbiP2 HsdM Rve Feature: gene Location: 3072-3323 bp Feature: gene Location: 3896-4849 bp Ori: KWY08469.1 Feature: domain Description: Tra8 Location: 3899-4826 bp Feature: domain Description: Tra8 Location: 3899-4826 bp Feature: gene Location: 4914-6302 bp Ori: KWY08477.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 5175-5640 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 51 75-5640 bp Feature: gene Location: 6640-8115 bp Feature: domain Description: HsdM Location: 6661-8086 bp Feature: domain Description: HsdM Location: 6661 -8086 bp Feature: gene Location: 8141-8821 bp Ori: KWY08470.1 Feature: domain Description: Rve Location: 8144-8792 bp Feature: domain Description: Rve Location: 81 44-8792 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra8 (COG2826), RVT-AbiP2, HsdM (COG0286), Rve (COG3316)

Seq: LNLH01000110.1 Enterococcus faecium strain VRE-1300899 Contig_6, whole genome shotgun sequence (49051 bp)
Overview 1 RT 1: 14425-26405 bp Neighborhood of RT #1 [14425, 26410] TcpE ArdA RVT-GII HNHc DUF3789 HTH_XRE Rol_Rep_N Rep_trans Zeta_toxin RVT-GII HNHc FtsK Feature: gene Location: 14425-14814 bp Ori: KWY07303.1 Feature: domain Description: TcpE Location: 14443-14743 bp Feature: domain Description: TcpE Location: 14443-14743 bp Feature: gene Location: 14874-15377 bp Ori: KWY07304.1 Feature: domain Description: ArdA Location: 14892-15363 bp Feature: domain Description: ArdA Location: 14892 -15363 bp Feature: gene Location: 15718-17628 bp Ori: KWY07305.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16051-16789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16051-16789 bp Feature: domain Description: HNHc Note: nucleases Location: 17344-17509 bp Feature: domain Description: HNHc Note: nucleases Location: 17344-17509 bp Feature: gene Location: 18374-18493 bp Ori: KWY07306.1 Feature: domain Description: DUF3789 Location: 18383-18476 bp Feature: domain Description: DUF3789 Location: 18383-18476 bp Feature: gene Location: 18508-19692 bp Ori: KWY07307.1 Feature: domain Description: HTH_XRE Location: 18538-18682 bp Feature: domain Description: HTH_XRE Location: 18538-18682 bp Feature: domain Description: Rol_Rep_N Location: 18715-18979 bp Feature: domain Description: Rol_Rep_N Location: 18715-18979 bp Feature: domain Description: Rep_trans Location: 19003-19615 bp Feature: domain Description: Rep_trans Location: 19003-19615 bp Feature: gene Location: 21606-22280 bp Ori: KWY07311.1 Feature: domain Description: Zeta_toxin Location: 21705-22188 bp Feature: domain Description: Zeta_toxin Location: 2 1705-2 2 188 bp Feature: gene Location: 22358-22597 bp Feature: gene Location: 22691-24550 bp Ori: KWY07313.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23000-23741 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 3000-2 3741 bp Feature: domain Description: HNHc Note: nucleases Location: 24296-24434 bp Feature: domain Description: HNHc Note: nucleases Location: 2 42 96-2 4434 bp Feature: gene Location: 24669-24899 bp Feature: gene Location: 25283-26410 bp Feature: domain Description: FtsK Location: 25943-26405 bp Feature: domain Description: FtsK Location: 2 5943-2 6405 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TcpE (pfam12648), ArdA (pfam07275), RVT-GII, HNHc (smart00507), DUF3789 (pfam12664), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), Zeta_toxin (pfam06414), FtsK (COG1674)