myRT

myRT report for GCA_001546975.1_ASM154697v1

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Seq: LNJU01000002.1 Burkholderia ubonensis strain MSMB1157 MSMB1157WGS_3, whole genome shotgun sequence (231526 bp)
Overview 1 RT 1: 50654-56781 bp 2 RT 2: 115187-121968 bp 3 RT 3: 173919-177773 bp 4 RT 4: 191092-198488 bp 5 RT 5: 211854-216542 bp Neighborhood of RT #1 [50654, 56843] DDE_3 DDE_Tnp_1_assoc RVT-GII COG4584 PRK06526 Neighborhood of RT #2 [115187, 122003] PHA02517 PHA02517 RVT-GII RVT-GII GIIM TnpB_IS66 Neighborhood of RT #3 [173919, 177943] Nterm_IS4 RVT-GII GIIM HTH_32 rve HTH_23 Neighborhood of RT #4 [191092, 198532] InsE PHA02517 RVT-GII COG4951 SSL2 Neighborhood of RT #5 [211854, 216542] rve InsA RVT-GII GIIM Feature: gene Location: 50654-50986 bp Ori: KWZ58694.1 Feature: domain Description: DDE_3 Location: 50666-50897 bp Feature: domain Description: DDE_3 Location: 50666-50897 bp Feature: gene Location: 51191-51580 bp Ori: KWZ58695.1 Feature: domain Description: DDE_Tnp_1_assoc Location: 51224-51461 bp Feature: domain Description: DDE_Tnp_1 _assoc Location: 51 224-51 461 bp Feature: gene Location: 52493-53560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52904-53513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52904-5351 3 bp Feature: gene Location: 54584-56092 bp Ori: KWZ58696.1 Feature: domain Description: COG4584 Location: 54659-55409 bp Feature: domain Description: COG4584 Location: 54659-55409 bp Feature: gene Location: 56076-56843 bp Ori: KWZ58815.1 Feature: domain Description: PRK06526 Location: 56169-56781 bp Feature: domain Description: PRK06526 Location: 561 69-56781 bp Feature: gene Location: 115187-116083 bp Ori: KWZ58739.1 Feature: domain Description: PHA02517 Location: 115253-116057 bp Feature: domain Description: PHA0251 7 Location: 1 1 5253-1 1 6057 bp Feature: gene Location: 116342-116951 bp Feature: domain Description: PHA02517 Location: 116348-116684 bp Feature: domain Description: PHA0251 7 Location: 1 1 6348-1 1 6684 bp Feature: gene Location: 117259-118548 bp Ori: KWZ58740.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117463-118153 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 7463-1 1 81 53 bp Feature: gene Location: 118799-120046 bp Ori: KWZ58741.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 119018-119642 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 901 8-1 1 9642 bp Feature: domain Description: GIIM Note: maturase Location: 119738-119948 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 9738-1 1 9948 bp Feature: gene Location: 121543-121674 bp Feature: gene Location: 121650-122003 bp Ori: KWZ58743.1 Feature: domain Description: TnpB_IS66 Location: 121677-121968 bp Feature: domain Description: TnpB_IS66 Location: 1 21 677-1 21 968 bp Feature: gene Location: 173919-174173 bp Ori: KWZ58774.1 Feature: domain Description: Nterm_IS4 Location: 173964-174039 bp Feature: domain Description: Nterm_IS4 Location: 1 73964-1 74039 bp Feature: gene Location: 174868-175694 bp Feature: gene Location: 175755-176468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 175764-176067 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 75764-1 76067 bp Feature: domain Description: GIIM Note: maturase Location: 176145-176364 bp Feature: domain Description: GIIM Note: maturase Location: 1 761 45-1 76364 bp Feature: gene Location: 176587-177279 bp Feature: domain Description: HTH_32 Location: 176752-176980 bp Feature: domain Description: HTH_32 Location: 1 76752-1 76980 bp Feature: domain Description: rve Location: 177058-177277 bp Feature: domain Description: rve Location: 1 77058-1 77277 bp Feature: gene Location: 177410-177943 bp Ori: KWZ58775.1 Feature: domain Description: HTH_23 Location: 177680-177773 bp Feature: domain Description: HTH_23 Location: 1 77680-1 77773 bp Feature: gene Location: 191092-191385 bp Ori: KWZ58788.1 Feature: domain Description: InsE Location: 191113-191380 bp Feature: domain Description: InsE Location: 1 91 1 1 3-1 91 380 bp Feature: gene Location: 191382-192272 bp Ori: KWZ58789.1 Feature: domain Description: PHA02517 Location: 191454-192270 bp Feature: domain Description: PHA0251 7 Location: 1 91 454-1 92270 bp Feature: gene Location: 192616-193365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 192820-193366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 92820-1 93366 bp Feature: gene Location: 194158-195117 bp Feature: gene Location: 196094-198532 bp Ori: KWZ58830.1 Feature: domain Description: COG4951 Location: 196259-197294 bp Feature: domain Description: COG4951 Location: 1 96259-1 97294 bp Feature: domain Description: SSL2 Location: 197384-198488 bp Feature: domain Description: SSL2 Location: 1 97384-1 98488 bp Feature: gene Location: 211854-213368 bp Ori: KWZ58832.1 Feature: domain Description: rve Location: 212235-212625 bp Feature: domain Description: rve Location: 21 2235-21 2625 bp Feature: gene Location: 213744-214277 bp Ori: KWZ58804.1 Feature: domain Description: InsA Location: 213831-214110 bp Feature: domain Description: InsA Location: 21 3831 -21 41 1 0 bp Feature: gene Location: 214459-215655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 214597-215254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 4597-21 5254 bp Feature: domain Description: GIIM Note: maturase Location: 215332-215548 bp Feature: domain Description: GIIM Note: maturase Location: 21 5332-21 5548 bp Feature: gene Location: 215716-216542 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), DDE_Tnp_1_assoc (pfam13808), RVT-GII, COG4584 (Transposase ), PRK06526 (transposase; Provisional), PHA02517 (putative transposase OrfB; Reviewed), GIIM (pfam08388), TnpB_IS66 (pfam05717), Nterm_IS4 (pfam13006), HTH_32 (pfam13565)
rve (pfam00665), HTH_23 (pfam13384), InsE (COG2963), COG4951 (Uncharacterized protein ), SSL2 (COG1061), InsA (COG3677)

Seq: LNJU01000003.1 Burkholderia ubonensis strain MSMB1157 MSMB1157WGS_4, whole genome shotgun sequence (422383 bp)
Overview 1 RT 1: 339716-343974 bp Neighborhood of RT #1 [339716, 344000] COG3547 IstB_IS21 RVT-GII GIIM DDE_Tnp_IS66 DDE_Tnp_IS66_C TnpB_IS66 Feature: gene Location: 339716-340507 bp Feature: domain Description: COG3547 Location: 339740-340499 bp Feature: domain Description: COG3547 Location: 339740-340499 bp Feature: gene Location: 340583-341032 bp Feature: domain Description: IstB_IS21 Location: 340589-340946 bp Feature: domain Description: IstB_IS2 1 Location: 340589-340946 bp Feature: gene Location: 341329-342591 bp Ori: KWZ58511.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 341533-342190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 341533-342 190 bp Feature: domain Description: GIIM Note: maturase Location: 342268-342484 bp Feature: domain Description: GIIM Note: maturase Location: 342 2 68-342 484 bp Feature: gene Location: 342628-343632 bp Feature: domain Description: DDE_Tnp_IS66 Location: 342646-343450 bp Feature: domain Description: DDE_Tnp_IS66 Location: 342 646-343450 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 343471-343582 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 343471-343582 bp Feature: gene Location: 343710-344000 bp Ori: KWZ58609.1 Feature: domain Description: TnpB_IS66 Location: 343713-343974 bp Feature: domain Description: TnpB_IS66 Location: 343713-343974 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), IstB_IS21 (pfam01695), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), TnpB_IS66 (pfam05717)

Seq: CM003771.1 Burkholderia ubonensis strain MSMB1157 chromosome 1, complete sequence, whole genome shotgun sequence (3496452 bp)
Overview 1 RT 1: 1819579-1826455 bp Neighborhood of RT #1 [1819579, 1826460] Cupin_6 AraC VOC RVT-Retrons DUF3141 PRK07533 Feature: gene Location: 1819579-1820406 bp Ori: KWZ60590.1 Feature: domain Description: Cupin_6 Location: 1819588-1820047 bp Feature: domain Description: Cupin_6 Location: 1819588-1820047 bp Feature: domain Description: AraC Location: 1820056-1820395 bp Feature: domain Description: AraC Location: 1820056-18203 95 bp Feature: gene Location: 1820845-1821231 bp Ori: KWZ60591.1 Feature: domain Description: VOC Location: 1820860-1821181 bp Feature: domain Description: VOC Location: 1820860-1821181 bp Feature: gene Location: 1821534-1822883 bp Ori: KWZ60592.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1821999-1822635 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1821999-182263 5 bp Feature: gene Location: 1823132-1825390 bp Ori: KWZ60593.1 Feature: domain Description: DUF3141 Location: 1823258-1824989 bp Feature: domain Description: DUF3 141 Location: 1823 258-1824989 bp Feature: gene Location: 1825681-1826460 bp Ori: KWZ60594.1 Feature: domain Description: PRK07533 Location: 1825699-1826455 bp Feature: domain Description: PRK0753 3 Location: 1825699-1826455 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cupin_6 (pfam12852), AraC (COG2207), VOC (cl14632), RVT-Retrons, DUF3141 (pfam11339), PRK07533 (enoyl- reductase FabI)