myRT

myRT report for GCA_001547355.1_ASM154735v1

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Seq: LNLE01000013.1 Enterococcus faecium strain U-1313438 Contig_11, whole genome shotgun sequence (66140 bp)
Overview 1 RT 1: 43792-48987 bp Neighborhood of RT #1 [43792, 49058] HTH_XRE Rol_Rep_N Rep_trans DUF3789 RVT-GII HNHc ArdA TcpE Feature: gene Location: 43792-44976 bp Feature: domain Description: HTH_XRE Location: 43822-43966 bp Feature: domain Description: HTH_XRE Location: 43822-43966 bp Feature: domain Description: Rol_Rep_N Location: 43999-44263 bp Feature: domain Description: Rol_Rep_N Location: 43999-44263 bp Feature: domain Description: Rep_trans Location: 44287-44899 bp Feature: domain Description: Rep_trans Location: 44287-44899 bp Feature: gene Location: 44991-45110 bp Feature: domain Description: DUF3789 Location: 45000-45093 bp Feature: domain Description: DUF3789 Location: 45000-45093 bp Feature: gene Location: 45855-47765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46188-46926 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 461 88-46926 bp Feature: domain Description: HNHc Note: nucleases Location: 47481-47646 bp Feature: domain Description: HNHc Note: nucleases Location: 47481 -47646 bp Feature: gene Location: 48106-48609 bp Feature: domain Description: ArdA Location: 48124-48595 bp Feature: domain Description: ArdA Location: 481 24-48595 bp Feature: gene Location: 48669-49058 bp Feature: domain Description: TcpE Location: 48687-48987 bp Feature: domain Description: TcpE Location: 48687-48987 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), DUF3789 (pfam12664), RVT-GII, HNHc (smart00507), ArdA (pfam07275), TcpE (pfam12648)

Seq: LNLE01000107.1 Enterococcus faecium strain U-1313438 Contig_43, whole genome shotgun sequence (29306 bp)
Overview 1 RT 1: 1-4802 bp Neighborhood of RT #1 [1, 4843] RVT-GII AAA_10 Transposase_mut Feature: gene Location: 1-387 bp Feature: gene Location: 785-2611 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1085-1784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1085-1784 bp Feature: gene Location: 2724-3563 bp Feature: domain Description: AAA_10 Location: 2730-3549 bp Feature: domain Description: AAA_10 Location: 2 730-3549 bp Feature: gene Location: 3656-4843 bp Feature: domain Description: Transposase_mut Location: 3659-4802 bp Feature: domain Description: Transposase_mut Location: 3659-4802 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_10 (pfam12846), Transposase_mut (pfam00872), RVT-GII

Seq: LNLE01000162.1 Enterococcus faecium strain U-1313438 Contig_91, whole genome shotgun sequence (13237 bp)
Overview 1 RT 1: 6706-12431 bp Neighborhood of RT #1 [6706, 12431] PinE RVT-GII PolY_Pol_V_umuC Feature: gene Location: 6706-6909 bp Feature: gene Location: 7121-7705 bp Feature: domain Description: PinE Location: 7127-7688 bp Feature: domain Description: PinE Location: 7127-7688 bp Feature: gene Location: 8849-10711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9158-9896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9158-9896 bp Feature: gene Location: 10793-12088 bp Feature: domain Description: PolY_Pol_V_umuC Location: 10832-11867 bp Feature: domain Description: PolY_Pol_V_umuC Location: 1083 2-11867 bp Feature: gene Location: 12081-12431 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PolY_Pol_V_umuC (cd01700), PinE (COG1961), RVT-GII