myRT

myRT report for GCA_001550305.1_ASM155030v1

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Seq: LRTP01000148.1 Streptomyces diastatochromogenes strain ATCC 12309 diasta_148.1, whole genome shotgun sequence (53988 bp)
Overview 1 RT 1: 29103-33338 bp Neighborhood of RT #1 [29103, 33355] APH RVT-GII GIIM DDE_Tnp_4 Feature: gene Location: 29103-29747 bp Feature: domain Description: APH Location: 29154-29493 bp Feature: domain Description: APH Location: 291 54-29493 bp Feature: gene Location: 29823-30278 bp Feature: gene Location: 30958-32424 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31294-31990 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 294-31 990 bp Feature: domain Description: GIIM Note: maturase Location: 32062-32281 bp Feature: domain Description: GIIM Note: maturase Location: 32062-32281 bp Feature: gene Location: 32526-32969 bp Feature: gene Location: 33137-33355 bp Feature: domain Description: DDE_Tnp_4 Location: 33152-33338 bp Feature: domain Description: DDE_Tnp_4 Location: 331 52-33338 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT APH (pfam01636), RVT-GII, GIIM (pfam08388), DDE_Tnp_4 (pfam13359)

Seq: LRTP01000210.1 Streptomyces diastatochromogenes strain ATCC 12309 diasta_210.1, whole genome shotgun sequence (23914 bp)
Overview 1 RT 1: 7643-13314 bp Neighborhood of RT #1 [7643, 13493] COG3905 Resolvase Recombinase Zn_ribbon_recom RVT-GII Intron_maturas2 HNHc Tryp_SPc Trypsin Feature: gene Location: 7643-7981 bp Feature: domain Description: COG3905 Location: 7835-7952 bp Feature: domain Description: COG3905 Location: 7835-7952 bp Feature: gene Location: 8114-10084 bp Feature: domain Description: Resolvase Location: 8126-8564 bp Feature: domain Description: Resolvase Location: 812 6-8564 bp Feature: domain Description: Recombinase Location: 8654-9017 bp Feature: domain Description: Recombinase Location: 8654-9017 bp Feature: domain Description: Zn_ribbon_recom Location: 9056-9248 bp Feature: domain Description: Zn_ribbon_recom Location: 9056-92 48 bp Feature: gene Location: 9669-10892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9735-10167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9735-10167 bp Feature: domain Description: Intron_maturas2 Location: 10284-10497 bp Feature: domain Description: Intron_maturas2 Location: 102 84-10497 bp Feature: domain Description: HNHc Note: nucleases Location: 10689-10848 bp Feature: domain Description: HNHc Note: nucleases Location: 10689-10848 bp Feature: gene Location: 11091-11660 bp Feature: gene Location: 11904-13493 bp Feature: domain Description: Tryp_SPc Location: 12003-12684 bp Feature: domain Description: Tryp_SPc Location: 12 003-12 684 bp Feature: domain Description: Trypsin Location: 12816-13314 bp Feature: domain Description: Trypsin Location: 12 816-13314 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tryp_SPc (smart00020), Trypsin (pfam00089), COG3905 (Predicted transcriptional regulator ), Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: LRTP01000277.1 Streptomyces diastatochromogenes strain ATCC 12309 diasta_277.1, whole genome shotgun sequence (48788 bp)
Overview 1 RT 1: 13142-16336 bp Neighborhood of RT #1 [13142, 16434] DEXQc_UvrD RVT-GII GIIM DUF4096 Feature: gene Location: 13142-13378 bp Feature: domain Description: DEXQc_UvrD Location: 13145-13193 bp Feature: domain Description: DEXQc_UvrD Location: 13 145-13 193 bp Feature: gene Location: 13445-13582 bp Feature: gene Location: 14184-15194 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14187-14808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14187-14808 bp Feature: domain Description: GIIM Note: maturase Location: 14889-15114 bp Feature: domain Description: GIIM Note: maturase Location: 14889-15114 bp Feature: gene Location: 15789-15965 bp Feature: gene Location: 16075-16434 bp Feature: domain Description: DUF4096 Location: 16108-16336 bp Feature: domain Description: DUF4096 Location: 16108-163 3 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEXQc_UvrD (cd17932), RVT-GII, GIIM (pfam08388), DUF4096 (pfam13340)

Seq: LRTP01000303.1 Streptomyces diastatochromogenes strain ATCC 12309 diasta_303.1, whole genome shotgun sequence (17383 bp)
Overview 1 RT 1: 110-5121 bp Neighborhood of RT #1 [110, 5121] COG3547 RVT-GII GIIM DEDD_Tnp_IS110 Transposase_20 Feature: gene Location: 110-1459 bp Feature: domain Description: COG3547 Location: 413-1406 bp Feature: domain Description: COG354 7 Location: 4 13-14 06 bp Feature: gene Location: 2009-2197 bp Feature: gene Location: 2423-3853 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2744-3431 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 274 4 -34 31 bp Feature: domain Description: GIIM Note: maturase Location: 3503-3731 bp Feature: domain Description: GIIM Note: maturase Location: 3503-3731 bp Feature: gene Location: 4061-4870 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 4073-4430 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 4 073-4 4 30 bp Feature: domain Description: Transposase_20 Location: 4769-4865 bp Feature: domain Description: Transposase_20 Location: 4 769-4 865 bp Feature: gene Location: 4936-5121 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371)

Seq: LRTP01000305.1 Streptomyces diastatochromogenes strain ATCC 12309 diasta_305.1, whole genome shotgun sequence (17194 bp)
Overview 1 RT 1: 9970-15472 bp Neighborhood of RT #1 [9970, 15472] DEDD_Tnp_IS110 Transposase_20 RVT-GII GIIM RVT-GII GIIM Feature: gene Location: 9970-10857 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 9976-10111 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 9976-10111 bp Feature: domain Description: Transposase_20 Location: 10453-10708 bp Feature: domain Description: Transposase_20 Location: 1045 3-10708 bp Feature: gene Location: 11097-11246 bp Feature: gene Location: 11621-12874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11837-12497 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11837-12497 bp Feature: domain Description: GIIM Note: maturase Location: 12578-12809 bp Feature: domain Description: GIIM Note: maturase Location: 125 78-12809 bp Feature: gene Location: 13423-14685 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13639-14299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13639-14299 bp Feature: domain Description: GIIM Note: maturase Location: 14377-14605 bp Feature: domain Description: GIIM Note: maturase Location: 14377-14605 bp Feature: gene Location: 14817-14951 bp Feature: gene Location: 15299-15472 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371)

Seq: LRTP01000335.1 Streptomyces diastatochromogenes strain ATCC 12309 diasta_335.1, whole genome shotgun sequence (15355 bp)
Overview 1 RT 1: 11934-15271 bp Neighborhood of RT #1 [11934, 15354] Doc RVT-GII GIIM Feature: gene Location: 11934-12200 bp Feature: gene Location: 12206-12592 bp Feature: domain Description: Doc Location: 12290-12539 bp Feature: domain Description: Doc Location: 12290-12539 bp Feature: gene Location: 13951-15354 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14281-14965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14281-1496 5 bp Feature: domain Description: GIIM Note: maturase Location: 15037-15271 bp Feature: domain Description: GIIM Note: maturase Location: 15037-15271 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Doc (COG3654), RVT-GII, GIIM (pfam08388)

Seq: LRTP01000356.1 Streptomyces diastatochromogenes strain ATCC 12309 diasta_356.1, whole genome shotgun sequence (13745 bp)
Overview 1 RT 1: 3022-8232 bp Neighborhood of RT #1 [3022, 8243] Lsr2 Rve RVT-GII GIIM HTH_Tnp_4 DDE_Tnp_4 COG4889 HA HA HA Feature: gene Location: 3022-3186 bp Feature: gene Location: 3249-3581 bp Feature: domain Description: Lsr2 Location: 3252-3576 bp Feature: domain Description: Lsr2 Location: 3252-357 6 bp Feature: gene Location: 4121-5620 bp Feature: domain Description: Rve Location: 4154-4352 bp Feature: domain Description: Rve Location: 4154-4352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4595-5234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4595-5234 bp Feature: domain Description: GIIM Note: maturase Location: 5318-5510 bp Feature: domain Description: GIIM Note: maturase Location: 5318-5510 bp Feature: gene Location: 5803-6624 bp Feature: domain Description: HTH_Tnp_4 Location: 5881-6031 bp Feature: domain Description: HTH_Tnp_4 Location: 5881-6031 bp Feature: domain Description: DDE_Tnp_4 Location: 6121-6559 bp Feature: domain Description: DDE_Tnp_4 Location: 6121-6559 bp Feature: gene Location: 6792-8243 bp Feature: domain Description: COG4889 Location: 6810-7101 bp Feature: domain Description: COG4889 Location: 6810-7 101 bp Feature: domain Description: HA Location: 7275-7512 bp Feature: domain Description: HA Location: 7 27 5-7 512 bp Feature: domain Description: HA Location: 7530-7767 bp Feature: domain Description: HA Location: 7 530-7 7 67 bp Feature: domain Description: HA Location: 8025-8232 bp Feature: domain Description: HA Location: 8025-8232 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Lsr2 (pfam11774), Rve (COG3316), RVT-GII, GIIM (pfam08388), HTH_Tnp_4 (pfam13613), DDE_Tnp_4 (pfam13359), COG4889 (Predicted helicase ), HA (pfam03457)

Seq: LRTP01000577.1 Streptomyces diastatochromogenes strain ATCC 12309 diasta_577.1, whole genome shotgun sequence (67488 bp)
Overview 1 RT 1: 57156-65091 bp Neighborhood of RT #1 [57156, 65091] PurR PRK10150 RVT_N RVT-GII GIIM DDE_3 Feature: gene Location: 57156-58220 bp Feature: domain Description: PurR Location: 57171-58101 bp Feature: domain Description: PurR Location: 57171-58 101 bp Feature: gene Location: 58437-60287 bp Feature: domain Description: PRK10150 Location: 58497-60009 bp Feature: domain Description: PRK10150 Location: 58 497-60009 bp Feature: gene Location: 60560-62365 bp Feature: RT Description: RVT_N Location: 60647-60884 bp Feature: RT Description: RVT_N Location: 60647-608 8 4 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60944-61601 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60944-61601 bp Feature: domain Description: GIIM Note: maturase Location: 61655-61886 bp Feature: domain Description: GIIM Note: maturase Location: 61655-618 8 6 bp Feature: gene Location: 63024-63350 bp Feature: domain Description: DDE_3 Location: 63033-63330 bp Feature: domain Description: DDE_3 Location: 63033-63330 bp Feature: gene Location: 64222-65091 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PurR (COG1609), PRK10150 (beta-D-glucuronidase; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DDE_3 (pfam13358)

Seq: LRTP01000075.1 Streptomyces diastatochromogenes strain ATCC 12309 diasta_75.1, whole genome shotgun sequence (25348 bp)
Overview 1 RT 1: 8401-12210 bp Neighborhood of RT #1 [8401, 12210] FolA RVT-GII GIIM Feature: gene Location: 8401-8658 bp Feature: gene Location: 8579-8971 bp Feature: domain Description: FolA Location: 8597-8921 bp Feature: domain Description: FolA Location: 859 7-89 21 bp Feature: gene Location: 10284-11540 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10488-11154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10488-11154 bp Feature: domain Description: GIIM Note: maturase Location: 11235-11460 bp Feature: domain Description: GIIM Note: maturase Location: 11235-11460 bp Feature: gene Location: 11671-11820 bp Feature: gene Location: 11914-12210 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), FolA (COG0262)

Seq: LRTP01000841.1 Streptomyces diastatochromogenes strain ATCC 12309 diasta_842.1, whole genome shotgun sequence (23507 bp)
Overview 1 RT 1: 16583-20710 bp Neighborhood of RT #1 [16583, 21405] DDE_3 PHA02517 RVT-GII Intron_maturas2 HNHc PHA02517 DEDD_Tnp_IS110 Feature: gene Location: 16583-17029 bp Feature: domain Description: DDE_3 Location: 16730-16925 bp Feature: domain Description: DDE_3 Location: 16730-16925 bp Feature: gene Location: 17120-17671 bp Feature: domain Description: PHA02517 Location: 17213-17651 bp Feature: domain Description: PHA02517 Location: 17213-17651 bp Feature: gene Location: 17687-19474 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17951-18746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17951-18746 bp Feature: domain Description: Intron_maturas2 Location: 18857-19079 bp Feature: domain Description: Intron_maturas2 Location: 18857-19079 bp Feature: domain Description: HNHc Note: nucleases Location: 19280-19430 bp Feature: domain Description: HNHc Note: nucleases Location: 19280-19430 bp Feature: gene Location: 19941-20429 bp Feature: domain Description: PHA02517 Location: 20013-20379 bp Feature: domain Description: PHA02517 Location: 20013-20379 bp Feature: gene Location: 20443-21405 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 20449-20710 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 20449-20710 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DEDD_Tnp_IS110 (pfam01548)

Seq: LRTP01000913.1 Streptomyces diastatochromogenes strain ATCC 12309 diasta_914.1, whole genome shotgun sequence (5487 bp)
Overview 1 RT 1: 594-4395 bp Neighborhood of RT #1 [594, 4424] RVT-GII GIIM HTH_32 DDE_3 COG3981 Feature: gene Location: 594-2060 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1626 bp Feature: domain Description: GIIM Note: maturase Location: 1698-1917 bp Feature: domain Description: GIIM Note: maturase Location: 1698-1917 bp Feature: gene Location: 2615-3706 bp Feature: domain Description: HTH_32 Location: 2807-3017 bp Feature: domain Description: HTH_32 Location: 2807-3017 bp Feature: domain Description: DDE_3 Location: 3140-3575 bp Feature: domain Description: DDE_3 Location: 3140-3575 bp Feature: gene Location: 3870-4424 bp Feature: domain Description: COG3981 Location: 3990-4395 bp Feature: domain Description: COG3981 Location: 3990-4395 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_32 (pfam13565), DDE_3 (pfam13358), COG3981 (Predicted acetyltransferase ), RVT-GII, GIIM (pfam08388)