myRT

myRT report for GCA_001554495.1_ASM155449v1

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Seq: LRYL01000058.1 Pseudomonas aeruginosa strain AU6854 NODE_7_length_377363_cov_5.6833_ID_13, whole genome shotgun sequence (377363 bp)
Overview 1 RT 1: 292478-302784 bp 2 RT 2: 319043-327881 bp Neighborhood of RT #1 [292478, 302786] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [319043, 327910] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 292478-293599 bp Feature: domain Description: COG3177 Location: 292496-293588 bp Feature: domain Description: COG31 77 Location: 292496-293588 bp Feature: gene Location: 293858-293995 bp Feature: gene Location: 294323-296008 bp Feature: RT Description: RVT_N Location: 294380-294620 bp Feature: RT Description: RVT_N Location: 294380-294620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 294668-295304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 294668-295304 bp Feature: domain Description: GIIM Note: maturase Location: 295358-295589 bp Feature: domain Description: GIIM Note: maturase Location: 295358-295589 bp Feature: domain Description: HNH Note: nucleases Location: 295841-295979 bp Feature: domain Description: HNH Note: nucleases Location: 295841 -295979 bp Feature: gene Location: 297089-300826 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 297197-297854 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 2971 97-297854 bp Feature: domain Description: PRK09776 Location: 298067-298538 bp Feature: domain Description: PRK09776 Location: 298067-298538 bp Feature: domain Description: PAS Location: 298595-299120 bp Feature: domain Description: PAS Location: 298595-2991 20 bp Feature: domain Description: PRK10060 Location: 299129-300776 bp Feature: domain Description: PRK1 0060 Location: 2991 29-300776 bp Feature: gene Location: 300933-302786 bp Feature: domain Description: PRK05658 Location: 300945-302784 bp Feature: domain Description: PRK05658 Location: 300945-302784 bp Feature: gene Location: 319043-320335 bp Feature: domain Description: PRK10770 Location: 319133-320327 bp Feature: domain Description: PRK1 0770 Location: 31 91 33-320327 bp Feature: gene Location: 320316-323105 bp Feature: domain Description: LptD Location: 320511-323091 bp Feature: domain Description: LptD Location: 32051 1 -323091 bp Feature: gene Location: 323238-324950 bp Feature: RT Description: RVT_N Location: 323295-323538 bp Feature: RT Description: RVT_N Location: 323295-323538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 323583-324219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 323583-32421 9 bp Feature: domain Description: YkfC Location: 324426-324579 bp Feature: domain Description: YkfC Location: 324426-324579 bp Feature: domain Description: HNH Note: nucleases Location: 324756-324894 bp Feature: domain Description: HNH Note: nucleases Location: 324756-324894 bp Feature: gene Location: 326223-327239 bp Feature: domain Description: COG3178 Location: 326226-327225 bp Feature: domain Description: COG31 78 Location: 326226-327225 bp Feature: gene Location: 327236-327910 bp Feature: domain Description: NTP_transferase_like_1 Location: 327242-327881 bp Feature: domain Description: NTP_transferase_like_1 Location: 327242-327881 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)