myRT

myRT report for GCA_001554505.1_ASM155450v1

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Seq: LRYN01000049.1 Pseudomonas aeruginosa strain AU20916 NODE_5_length_377526_cov_8.76205_ID_9, whole genome shotgun sequence (377526 bp)
Overview 1 RT 1: 292477-302783 bp 2 RT 2: 319042-327880 bp Neighborhood of RT #1 [292477, 302785] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [319042, 327909] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 292477-293598 bp Feature: domain Description: COG3177 Location: 292495-293587 bp Feature: domain Description: COG31 77 Location: 292495-293587 bp Feature: gene Location: 293857-293994 bp Feature: gene Location: 294322-296007 bp Feature: RT Description: RVT_N Location: 294379-294619 bp Feature: RT Description: RVT_N Location: 294379-29461 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 294667-295303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 294667-295303 bp Feature: domain Description: GIIM Note: maturase Location: 295357-295588 bp Feature: domain Description: GIIM Note: maturase Location: 295357-295588 bp Feature: domain Description: HNH Note: nucleases Location: 295840-295978 bp Feature: domain Description: HNH Note: nucleases Location: 295840-295978 bp Feature: gene Location: 297088-300825 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 297196-297853 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 2971 96-297853 bp Feature: domain Description: PRK09776 Location: 298066-298537 bp Feature: domain Description: PRK09776 Location: 298066-298537 bp Feature: domain Description: PAS Location: 298594-299119 bp Feature: domain Description: PAS Location: 298594-2991 1 9 bp Feature: domain Description: PRK10060 Location: 299128-300775 bp Feature: domain Description: PRK1 0060 Location: 2991 28-300775 bp Feature: gene Location: 300932-302785 bp Feature: domain Description: PRK05658 Location: 300944-302783 bp Feature: domain Description: PRK05658 Location: 300944-302783 bp Feature: gene Location: 319042-320334 bp Feature: domain Description: PRK10770 Location: 319132-320326 bp Feature: domain Description: PRK1 0770 Location: 31 91 32-320326 bp Feature: gene Location: 320315-323104 bp Feature: domain Description: LptD Location: 320510-323090 bp Feature: domain Description: LptD Location: 32051 0-323090 bp Feature: gene Location: 323237-324949 bp Feature: RT Description: RVT_N Location: 323294-323537 bp Feature: RT Description: RVT_N Location: 323294-323537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 323582-324218 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 323582-32421 8 bp Feature: domain Description: YkfC Location: 324425-324578 bp Feature: domain Description: YkfC Location: 324425-324578 bp Feature: domain Description: HNH Note: nucleases Location: 324755-324893 bp Feature: domain Description: HNH Note: nucleases Location: 324755-324893 bp Feature: gene Location: 326222-327238 bp Feature: domain Description: COG3178 Location: 326225-327224 bp Feature: domain Description: COG31 78 Location: 326225-327224 bp Feature: gene Location: 327235-327909 bp Feature: domain Description: NTP_transferase_like_1 Location: 327241-327880 bp Feature: domain Description: NTP_transferase_like_1 Location: 327241 -327880 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)