myRT

myRT report for GCA_001554585.1_ASM155458v1

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Seq: LRYV01000037.1 Pseudomonas aeruginosa strain AU15431 NODE_7_length_378689_cov_8.41073_ID_13, whole genome shotgun sequence (378689 bp)
Overview 1 RT 1: 291874-302174 bp 2 RT 2: 318443-327275 bp Neighborhood of RT #1 [291874, 302182] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [318443, 327304] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 291874-292995 bp Feature: domain Description: COG3177 Location: 291892-292984 bp Feature: domain Description: COG31 77 Location: 291 892-292984 bp Feature: gene Location: 293254-293391 bp Feature: gene Location: 293719-295404 bp Feature: RT Description: RVT_N Location: 293776-294016 bp Feature: RT Description: RVT_N Location: 293776-29401 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 294064-294700 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 294064-294700 bp Feature: domain Description: GIIM Note: maturase Location: 294754-294985 bp Feature: domain Description: GIIM Note: maturase Location: 294754-294985 bp Feature: domain Description: HNH Note: nucleases Location: 295237-295375 bp Feature: domain Description: HNH Note: nucleases Location: 295237-295375 bp Feature: gene Location: 296485-300222 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 296593-297250 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 296593-297250 bp Feature: domain Description: PRK09776 Location: 297463-297934 bp Feature: domain Description: PRK09776 Location: 297463-297934 bp Feature: domain Description: PAS Location: 297991-298516 bp Feature: domain Description: PAS Location: 297991 -29851 6 bp Feature: domain Description: PRK10060 Location: 298525-300172 bp Feature: domain Description: PRK1 0060 Location: 298525-3001 72 bp Feature: gene Location: 300329-302182 bp Feature: domain Description: PRK05658 Location: 300341-302174 bp Feature: domain Description: PRK05658 Location: 300341 -3021 74 bp Feature: gene Location: 318443-319735 bp Feature: domain Description: PRK10770 Location: 318533-319727 bp Feature: domain Description: PRK1 0770 Location: 31 8533-31 9727 bp Feature: gene Location: 319716-322499 bp Feature: domain Description: LptD Location: 319911-322485 bp Feature: domain Description: LptD Location: 31 991 1 -322485 bp Feature: gene Location: 322632-324344 bp Feature: RT Description: RVT_N Location: 322689-322932 bp Feature: RT Description: RVT_N Location: 322689-322932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 322977-323613 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 322977-32361 3 bp Feature: domain Description: YkfC Location: 323820-323973 bp Feature: domain Description: YkfC Location: 323820-323973 bp Feature: domain Description: HNH Note: nucleases Location: 324150-324288 bp Feature: domain Description: HNH Note: nucleases Location: 3241 50-324288 bp Feature: gene Location: 325617-326633 bp Feature: domain Description: COG3178 Location: 325620-326619 bp Feature: domain Description: COG31 78 Location: 325620-32661 9 bp Feature: gene Location: 326630-327304 bp Feature: domain Description: NTP_transferase_like_1 Location: 326636-327275 bp Feature: domain Description: NTP_transferase_like_1 Location: 326636-327275 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)