myRT

myRT report for GCA_001554655.1_ASM155465v1

Download annotations/find similar RTs

Seq: LRYW01000095.1 Pseudomonas aeruginosa strain AU7033 NODE_9_length_180652_cov_8.38784_ID_17, whole genome shotgun sequence (180652 bp)
Overview 1 RT 1: 6638-14804 bp Neighborhood of RT #1 [6638, 15010] DUF262 YeeA RVT-UG5 AAA_15 AAA_15 Feature: gene Location: 6638-8509 bp Ori: KXD17132.1 Feature: domain Description: DUF262 Location: 6686-7454 bp Feature: domain Description: DUF262 Location: 6686-7454 bp Feature: gene Location: 8513-9439 bp Ori: KXD17133.1 Feature: domain Description: YeeA Location: 8600-9305 bp Feature: domain Description: YeeA Location: 8600-9305 bp Feature: gene Location: 10294-13314 bp Ori: KXD17134.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 10789-11260 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1 0789-1 1 260 bp Feature: gene Location: 13311-13868 bp Feature: gene Location: 13868-15010 bp Ori: KXD17136.1 Feature: domain Description: AAA_15 Location: 13871-14012 bp Feature: domain Description: AAA_1 5 Location: 1 3871 -1 401 2 bp Feature: domain Description: AAA_15 Location: 14693-14804 bp Feature: domain Description: AAA_1 5 Location: 1 4693-1 4804 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_15 (pfam13175)

Seq: LRYW01000035.1 Pseudomonas aeruginosa strain AU7033 NODE_3_length_274197_cov_8.38867_ID_5, whole genome shotgun sequence (274197 bp)
Overview 1 RT 1: 15507-21194 bp Neighborhood of RT #1 [15507, 21194] HDOD YgfZ RVT_N RVT-GII YkfC HNH SdhE Feature: gene Location: 15507-16343 bp Ori: KXD31679.1 Feature: domain Description: HDOD Location: 15510-16338 bp Feature: domain Description: HDOD Location: 15510-16338 bp Feature: gene Location: 16444-17388 bp Ori: KXD31680.1 Feature: domain Description: YgfZ Location: 16453-17353 bp Feature: domain Description: YgfZ Location: 16453-17353 bp Feature: gene Location: 18708-20414 bp Ori: KXD31681.1 Feature: domain Description: RVT_N Location: 18765-19008 bp Feature: domain Description: RVT_N Location: 18765-19008 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19053-19689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19053-19689 bp Feature: domain Description: YkfC Location: 19887-20043 bp Feature: domain Description: YkfC Location: 19887-2 0043 bp Feature: domain Description: HNH Note: nucleases Location: 20226-20364 bp Feature: domain Description: HNH Note: nucleases Location: 2 02 2 6-2 0364 bp Feature: gene Location: 20504-20758 bp Ori: KXD31682.1 Feature: domain Description: SdhE Location: 20510-20750 bp Feature: domain Description: SdhE Location: 2 0510-2 0750 bp Feature: gene Location: 20742-21194 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDOD (pfam08668), YgfZ (COG0354), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)