myRT

myRT report for GCA_001554665.1_ASM155466v1

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Seq: LRYX01000003.1 Pseudomonas aeruginosa strain AU10583 NODE_12_length_181210_cov_5.18451_ID_23, whole genome shotgun sequence (181210 bp)
Overview 1 RT 1: 7196-15362 bp Neighborhood of RT #1 [7196, 15568] DUF262 YeeA RVT-UG5 AAA_15 AAA_15 Feature: gene Location: 7196-9067 bp Ori: KXD39985.1 Feature: domain Description: DUF262 Location: 7244-8012 bp Feature: domain Description: DUF262 Location: 7244-801 2 bp Feature: gene Location: 9071-9997 bp Ori: KXD39986.1 Feature: domain Description: YeeA Location: 9158-9863 bp Feature: domain Description: YeeA Location: 91 58-9863 bp Feature: gene Location: 10852-13872 bp Ori: KXD39987.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 11347-11818 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1 1 347-1 1 81 8 bp Feature: gene Location: 13869-14426 bp Feature: gene Location: 14426-15568 bp Ori: KXD39989.1 Feature: domain Description: AAA_15 Location: 14429-14570 bp Feature: domain Description: AAA_1 5 Location: 1 4429-1 4570 bp Feature: domain Description: AAA_15 Location: 15251-15362 bp Feature: domain Description: AAA_1 5 Location: 1 5251 -1 5362 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_15 (pfam13175)

Seq: LRYX01000052.1 Pseudomonas aeruginosa strain AU10583 NODE_6_length_281642_cov_5.24056_ID_11, whole genome shotgun sequence (281642 bp)
Overview 1 RT 1: 34028-39715 bp Neighborhood of RT #1 [34028, 39715] HDOD YgfZ RVT_N RVT-GII YkfC HNH SdhE Feature: gene Location: 34028-34864 bp Ori: KXD27683.1 Feature: domain Description: HDOD Location: 34031-34859 bp Feature: domain Description: HDOD Location: 34031-34859 bp Feature: gene Location: 34965-35909 bp Ori: KXD27684.1 Feature: domain Description: YgfZ Location: 34974-35874 bp Feature: domain Description: YgfZ Location: 34974-35874 bp Feature: gene Location: 37229-38935 bp Ori: KXD27685.1 Feature: domain Description: RVT_N Location: 37286-37529 bp Feature: domain Description: RVT_N Location: 372 86-3752 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37574-38210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37574-382 10 bp Feature: domain Description: YkfC Location: 38408-38564 bp Feature: domain Description: YkfC Location: 38408-38564 bp Feature: domain Description: HNH Note: nucleases Location: 38747-38885 bp Feature: domain Description: HNH Note: nucleases Location: 38747-38885 bp Feature: gene Location: 39025-39279 bp Ori: KXD27686.1 Feature: domain Description: SdhE Location: 39031-39271 bp Feature: domain Description: SdhE Location: 39031-392 71 bp Feature: gene Location: 39263-39715 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDOD (pfam08668), YgfZ (COG0354), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)