myRT

myRT report for GCA_001554695.1_ASM155469v1

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Seq: LRZC01000015.1 Pseudomonas aeruginosa strain AU10409 NODE_23_length_127615_cov_6.57617_ID_45, whole genome shotgun sequence (127615 bp)
Overview 1 RT 1: 79236-85112 bp Neighborhood of RT #1 [79236, 85112] conj_PilL HepA SF2_C_SNF RVT_N RVT-GII GIIM HNHc DEXHc_Snf Feature: gene Location: 79236-79805 bp Ori: KXD66867.1 Feature: domain Description: conj_PilL Location: 79407-79710 bp Feature: domain Description: conj_PilL Location: 79407-7971 0 bp Feature: gene Location: 80004-81284 bp Feature: domain Description: HepA Location: 80040-80181 bp Feature: domain Description: HepA Location: 80040-801 81 bp Feature: domain Description: SF2_C_SNF Location: 80724-81120 bp Feature: domain Description: SF2_C_SNF Location: 80724-81 1 20 bp Feature: gene Location: 81332-83050 bp Ori: KXD66868.1 Feature: domain Description: RVT_N Location: 81389-81626 bp Feature: domain Description: RVT_N Location: 81 389-81 626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81677-82328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 677-82328 bp Feature: domain Description: GIIM Note: maturase Location: 82382-82613 bp Feature: domain Description: GIIM Note: maturase Location: 82382-8261 3 bp Feature: domain Description: HNHc Note: nucleases Location: 82847-83003 bp Feature: domain Description: HNHc Note: nucleases Location: 82847-83003 bp Feature: gene Location: 83668-84696 bp Feature: domain Description: DEXHc_Snf Location: 83881-84136 bp Feature: domain Description: DEXHc_Snf Location: 83881 -841 36 bp Feature: gene Location: 84807-85112 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT conj_PilL (TIGR03748), HepA (COG0553), SF2_C_SNF (cd18793), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DEXHc_Snf (cd17919)

Seq: LRZC01000055.1 Pseudomonas aeruginosa strain AU10409 NODE_8_length_233142_cov_8.94782_ID_15, whole genome shotgun sequence (233142 bp)
Overview 1 RT 1: 133406-144654 bp 2 RT 2: 160914-169737 bp Neighborhood of RT #1 [133406, 144656] NERD zf-C4_Topoisom COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like sensory_box sensory_box sensory_box sensory_box GGDEF PRK05658 Neighborhood of RT #2 [160914, 169766] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 133406-134176 bp Ori: KXD57049.1 Feature: domain Description: NERD Location: 133505-133838 bp Feature: domain Description: NERD Location: 133505-133838 bp Feature: domain Description: zf-C4_Topoisom Location: 134057-134171 bp Feature: domain Description: zf-C4_Topoisom Location: 134057-134171 bp Feature: gene Location: 134347-135468 bp Ori: KXD57050.1 Feature: domain Description: COG3177 Location: 134365-135457 bp Feature: domain Description: COG3177 Location: 134365-135457 bp Feature: gene Location: 136192-137877 bp Ori: KXD57051.1 Feature: domain Description: RVT_N Location: 136249-136489 bp Feature: domain Description: RVT_N Location: 1362 49-136489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136537-137173 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136537-137173 bp Feature: domain Description: GIIM Note: maturase Location: 137227-137458 bp Feature: domain Description: GIIM Note: maturase Location: 1372 2 7-137458 bp Feature: domain Description: HNH Note: nucleases Location: 137710-137848 bp Feature: domain Description: HNH Note: nucleases Location: 137710-137848 bp Feature: gene Location: 138958-142696 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 139066-139723 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 139066-13972 3 bp Feature: domain Description: sensory_box Location: 139888-140254 bp Feature: domain Description: sensory_box Location: 139888-1402 54 bp Feature: domain Description: sensory_box Location: 140266-140626 bp Feature: domain Description: sensory_box Location: 1402 66-14062 6 bp Feature: domain Description: sensory_box Location: 140638-141004 bp Feature: domain Description: sensory_box Location: 140638-141004 bp Feature: domain Description: sensory_box Location: 141019-141370 bp Feature: domain Description: sensory_box Location: 141019-141370 bp Feature: domain Description: GGDEF Location: 141376-141628 bp Feature: domain Description: GGDEF Location: 141376-14162 8 bp Feature: gene Location: 142803-144656 bp Ori: KXD57052.1 Feature: domain Description: PRK05658 Location: 142815-144654 bp Feature: domain Description: PRK05658 Location: 142 815-144654 bp Feature: gene Location: 160914-162206 bp Ori: KXD57070.1 Feature: domain Description: PRK10770 Location: 161004-162198 bp Feature: domain Description: PRK10770 Location: 161004-162 198 bp Feature: gene Location: 162187-164961 bp Ori: KXD57071.1 Feature: domain Description: LptD Location: 162382-164947 bp Feature: domain Description: LptD Location: 162 382 -164947 bp Feature: gene Location: 165094-166806 bp Ori: KXD57072.1 Feature: domain Description: RVT_N Location: 165151-165394 bp Feature: domain Description: RVT_N Location: 165151-165394 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 165439-166075 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 165439-166075 bp Feature: domain Description: YkfC Location: 166279-166435 bp Feature: domain Description: YkfC Location: 1662 79-166435 bp Feature: domain Description: HNH Note: nucleases Location: 166612-166750 bp Feature: domain Description: HNH Note: nucleases Location: 166612 -166750 bp Feature: gene Location: 168079-169095 bp Ori: KXD57073.1 Feature: domain Description: COG3178 Location: 168082-169081 bp Feature: domain Description: COG3178 Location: 168082 -169081 bp Feature: gene Location: 169092-169766 bp Ori: KXD57074.1 Feature: domain Description: NTP_transferase_like_1 Location: 169098-169737 bp Feature: domain Description: NTP_transferase_like_1 Location: 169098-169737 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), zf-C4_Topoisom (pfam01396), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), sensory_box (TIGR00229), GGDEF (TIGR00254)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)

Seq: LRZC01000033.1 Pseudomonas aeruginosa strain AU10409 NODE_3_length_409970_cov_7.10089_ID_5, whole genome shotgun sequence (409970 bp)
Overview 1 RT 1: 359-4806 bp Neighborhood of RT #1 [359, 4806] RVT-UG5 nitrilase COG4127 Feature: gene Location: 359-2839 bp Ori: KXD62435.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 362-791 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3 62-791 bp Feature: domain Description: nitrilase Location: 2153-2735 bp Feature: domain Description: nitrilase Location: 2153 -273 5 bp Feature: gene Location: 3209-4201 bp Ori: KXD62436.1 Feature: domain Description: COG4127 Location: 3215-4190 bp Feature: domain Description: COG4127 Location: 3 215-4190 bp Feature: gene Location: 4498-4806 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5, nitrilase (cl11424), COG4127 (Predicted restriction endonuclease, Mrr-cat superfamily )