myRT

myRT report for GCA_001554705.1_ASM155470v1

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Seq: LRZB01000003.1 Pseudomonas aeruginosa strain AU10272 NODE_12_length_178421_cov_7.79985_ID_23, whole genome shotgun sequence (178421 bp)
Overview 1 RT 1: 359-6603 bp Neighborhood of RT #1 [359, 6890] RVT-UG5 nitrilase COG4127 restrict_AAA_1 restrict_AAA_1 Feature: gene Location: 359-2839 bp Ori: KXD59238.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 362-791 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 362-791 bp Feature: domain Description: nitrilase Location: 2150-2735 bp Feature: domain Description: nitrilase Location: 21 50-2735 bp Feature: gene Location: 3209-4201 bp Ori: KXD59239.1 Feature: domain Description: COG4127 Location: 3215-4190 bp Feature: domain Description: COG41 27 Location: 321 5-41 90 bp Feature: gene Location: 5139-6890 bp Ori: KXD59240.1 Feature: domain Description: restrict_AAA_1 Location: 5142-5889 bp Feature: domain Description: restrict_AAA_1 Location: 51 42-5889 bp Feature: domain Description: restrict_AAA_1 Location: 6216-6603 bp Feature: domain Description: restrict_AAA_1 Location: 621 6-6603 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5, nitrilase (cl11424), COG4127 (Predicted restriction endonuclease, Mrr-cat superfamily ), restrict_AAA_1 (TIGR04435)

Seq: LRZB01000053.1 Pseudomonas aeruginosa strain AU10272 NODE_9_length_233089_cov_8.38934_ID_17, whole genome shotgun sequence (233089 bp)
Overview 1 RT 1: 133404-144650 bp 2 RT 2: 160909-169733 bp Neighborhood of RT #1 [133404, 144652] NERD zf-C4_Topoisom COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [160909, 169762] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 133404-134174 bp Ori: KXD45357.1 Feature: domain Description: NERD Location: 133503-133836 bp Feature: domain Description: NERD Location: 133503-133836 bp Feature: domain Description: zf-C4_Topoisom Location: 134055-134169 bp Feature: domain Description: zf-C4_Topoisom Location: 134055-134169 bp Feature: gene Location: 134345-135466 bp Ori: KXD45358.1 Feature: domain Description: COG3177 Location: 134363-135455 bp Feature: domain Description: COG3177 Location: 134363-135455 bp Feature: gene Location: 136189-137874 bp Ori: KXD45359.1 Feature: domain Description: RVT_N Location: 136246-136486 bp Feature: domain Description: RVT_N Location: 1362 46-136486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136534-137170 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136534-137170 bp Feature: domain Description: GIIM Note: maturase Location: 137224-137455 bp Feature: domain Description: GIIM Note: maturase Location: 1372 2 4-137455 bp Feature: domain Description: HNH Note: nucleases Location: 137707-137845 bp Feature: domain Description: HNH Note: nucleases Location: 137707-137845 bp Feature: gene Location: 138955-142692 bp Ori: KXD45360.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 139063-139720 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 139063-13972 0 bp Feature: domain Description: PRK09776 Location: 139933-140404 bp Feature: domain Description: PRK09776 Location: 139933-140404 bp Feature: domain Description: PAS Location: 140461-140986 bp Feature: domain Description: PAS Location: 140461-140986 bp Feature: domain Description: PRK10060 Location: 140998-142642 bp Feature: domain Description: PRK10060 Location: 140998-142 642 bp Feature: gene Location: 142799-144652 bp Ori: KXD45361.1 Feature: domain Description: PRK05658 Location: 142811-144650 bp Feature: domain Description: PRK05658 Location: 142 811-144650 bp Feature: gene Location: 160909-162201 bp Ori: KXD45379.1 Feature: domain Description: PRK10770 Location: 160999-162193 bp Feature: domain Description: PRK10770 Location: 160999-162 193 bp Feature: gene Location: 162182-164956 bp Ori: KXD45380.1 Feature: domain Description: LptD Location: 162377-164942 bp Feature: domain Description: LptD Location: 162 377-164942 bp Feature: gene Location: 165089-166801 bp Ori: KXD45381.1 Feature: domain Description: RVT_N Location: 165146-165389 bp Feature: domain Description: RVT_N Location: 165146-165389 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 165434-166070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 165434-166070 bp Feature: domain Description: YkfC Location: 166277-166430 bp Feature: domain Description: YkfC Location: 1662 77-166430 bp Feature: domain Description: HNH Note: nucleases Location: 166607-166745 bp Feature: domain Description: HNH Note: nucleases Location: 166607-166745 bp Feature: gene Location: 168075-169091 bp Ori: KXD45382.1 Feature: domain Description: COG3178 Location: 168078-169077 bp Feature: domain Description: COG3178 Location: 168078-169077 bp Feature: gene Location: 169088-169762 bp Ori: KXD45383.1 Feature: domain Description: NTP_transferase_like_1 Location: 169094-169733 bp Feature: domain Description: NTP_transferase_like_1 Location: 169094-169733 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), zf-C4_Topoisom (pfam01396), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091)
PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)