myRT

myRT report for GCA_001554735.1_ASM155473v1

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Seq: LRZD01000055.1 Pseudomonas aeruginosa strain AU10410 NODE_8_length_233094_cov_7.28046_ID_15, whole genome shotgun sequence (233094 bp)
Overview 1 RT 1: 133406-144652 bp 2 RT 2: 160912-169737 bp Neighborhood of RT #1 [133406, 144654] NERD zf-C4_Topoisom COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [160912, 169766] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 133406-134176 bp Ori: KXD61228.1 Feature: domain Description: NERD Location: 133505-133838 bp Feature: domain Description: NERD Location: 1 33505-1 33838 bp Feature: domain Description: zf-C4_Topoisom Location: 134057-134171 bp Feature: domain Description: zf-C4_Topoisom Location: 1 34057-1 341 71 bp Feature: gene Location: 134347-135468 bp Ori: KXD61229.1 Feature: domain Description: COG3177 Location: 134365-135457 bp Feature: domain Description: COG31 77 Location: 1 34365-1 35457 bp Feature: gene Location: 136191-137876 bp Ori: KXD61230.1 Feature: domain Description: RVT_N Location: 136248-136488 bp Feature: domain Description: RVT_N Location: 1 36248-1 36488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136536-137172 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 36536-1 371 72 bp Feature: domain Description: GIIM Note: maturase Location: 137226-137457 bp Feature: domain Description: GIIM Note: maturase Location: 1 37226-1 37457 bp Feature: domain Description: HNH Note: nucleases Location: 137709-137847 bp Feature: domain Description: HNH Note: nucleases Location: 1 37709-1 37847 bp Feature: gene Location: 138957-142694 bp Ori: KXD61231.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 139065-139722 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 1 39065-1 39722 bp Feature: domain Description: PRK09776 Location: 139935-140406 bp Feature: domain Description: PRK09776 Location: 1 39935-1 40406 bp Feature: domain Description: PAS Location: 140463-140988 bp Feature: domain Description: PAS Location: 1 40463-1 40988 bp Feature: domain Description: PRK10060 Location: 141000-142644 bp Feature: domain Description: PRK1 0060 Location: 1 41 000-1 42644 bp Feature: gene Location: 142801-144654 bp Ori: KXD61232.1 Feature: domain Description: PRK05658 Location: 142813-144652 bp Feature: domain Description: PRK05658 Location: 1 4281 3-1 44652 bp Feature: gene Location: 160912-162204 bp Ori: KXD61250.1 Feature: domain Description: PRK10770 Location: 161002-162196 bp Feature: domain Description: PRK1 0770 Location: 1 61 002-1 621 96 bp Feature: gene Location: 162185-164959 bp Ori: KXD61251.1 Feature: domain Description: LptD Location: 162380-164945 bp Feature: domain Description: LptD Location: 1 62380-1 64945 bp Feature: gene Location: 165093-166805 bp Ori: KXD61252.1 Feature: domain Description: RVT_N Location: 165150-165393 bp Feature: domain Description: RVT_N Location: 1 651 50-1 65393 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 165438-166074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 65438-1 66074 bp Feature: domain Description: YkfC Location: 166281-166434 bp Feature: domain Description: YkfC Location: 1 66281 -1 66434 bp Feature: domain Description: HNH Note: nucleases Location: 166611-166749 bp Feature: domain Description: HNH Note: nucleases Location: 1 6661 1 -1 66749 bp Feature: gene Location: 168079-169095 bp Ori: KXD61253.1 Feature: domain Description: COG3178 Location: 168082-169081 bp Feature: domain Description: COG31 78 Location: 1 68082-1 69081 bp Feature: gene Location: 169092-169766 bp Ori: KXD61254.1 Feature: domain Description: NTP_transferase_like_1 Location: 169098-169737 bp Feature: domain Description: NTP_transferase_like_1 Location: 1 69098-1 69737 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), zf-C4_Topoisom (pfam01396), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091)
PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)

Seq: LRZD01000004.1 Pseudomonas aeruginosa strain AU10410 NODE_13_length_178230_cov_6.86928_ID_25, whole genome shotgun sequence (178230 bp)
Overview 1 RT 1: 184-6428 bp Neighborhood of RT #1 [184, 6715] RVT-UG5 nitrilase COG4127 restrict_AAA_1 restrict_AAA_1 Feature: gene Location: 184-2664 bp Ori: KXD74670.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 187-616 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 187-616 bp Feature: domain Description: nitrilase Location: 1975-2560 bp Feature: domain Description: nitrilase Location: 1975-2 560 bp Feature: gene Location: 3034-4026 bp Ori: KXD74671.1 Feature: domain Description: COG4127 Location: 3040-4015 bp Feature: domain Description: COG412 7 Location: 3040-4015 bp Feature: gene Location: 4964-6715 bp Ori: KXD74672.1 Feature: domain Description: restrict_AAA_1 Location: 4967-5714 bp Feature: domain Description: restrict_AAA_1 Location: 4967-5714 bp Feature: domain Description: restrict_AAA_1 Location: 6041-6428 bp Feature: domain Description: restrict_AAA_1 Location: 6041-642 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5, nitrilase (cl11424), COG4127 (Predicted restriction endonuclease, Mrr-cat superfamily ), restrict_AAA_1 (TIGR04435)