myRT

myRT report for GCA_001554745.1_ASM155474v1

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Seq: LRZF01000002.1 Pseudomonas aeruginosa strain AU16821 NODE_11_length_232972_cov_9.38813_ID_21, whole genome shotgun sequence (232972 bp)
Overview 1 RT 1: 133406-144652 bp 2 RT 2: 160910-169734 bp Neighborhood of RT #1 [133406, 144654] NERD zf-C4_Topoisom COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [160910, 169763] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 133406-134176 bp Ori: KXD85341.1 Feature: domain Description: NERD Location: 133505-133838 bp Feature: domain Description: NERD Location: 1 33505-1 33838 bp Feature: domain Description: zf-C4_Topoisom Location: 134057-134171 bp Feature: domain Description: zf-C4_Topoisom Location: 1 34057-1 341 71 bp Feature: gene Location: 134347-135468 bp Ori: KXD85342.1 Feature: domain Description: COG3177 Location: 134365-135457 bp Feature: domain Description: COG31 77 Location: 1 34365-1 35457 bp Feature: gene Location: 136191-137876 bp Ori: KXD85343.1 Feature: domain Description: RVT_N Location: 136248-136488 bp Feature: domain Description: RVT_N Location: 1 36248-1 36488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136536-137172 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 36536-1 371 72 bp Feature: domain Description: GIIM Note: maturase Location: 137226-137457 bp Feature: domain Description: GIIM Note: maturase Location: 1 37226-1 37457 bp Feature: domain Description: HNH Note: nucleases Location: 137709-137847 bp Feature: domain Description: HNH Note: nucleases Location: 1 37709-1 37847 bp Feature: gene Location: 138957-142694 bp Ori: KXD85344.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 139065-139722 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 1 39065-1 39722 bp Feature: domain Description: PRK09776 Location: 139935-140406 bp Feature: domain Description: PRK09776 Location: 1 39935-1 40406 bp Feature: domain Description: PAS Location: 140463-140988 bp Feature: domain Description: PAS Location: 1 40463-1 40988 bp Feature: domain Description: PRK10060 Location: 141000-142644 bp Feature: domain Description: PRK1 0060 Location: 1 41 000-1 42644 bp Feature: gene Location: 142801-144654 bp Ori: KXD85345.1 Feature: domain Description: PRK05658 Location: 142813-144652 bp Feature: domain Description: PRK05658 Location: 1 4281 3-1 44652 bp Feature: gene Location: 160910-162202 bp Ori: KXD85363.1 Feature: domain Description: PRK10770 Location: 161000-162194 bp Feature: domain Description: PRK1 0770 Location: 1 61 000-1 621 94 bp Feature: gene Location: 162183-164957 bp Ori: KXD85364.1 Feature: domain Description: LptD Location: 162378-164943 bp Feature: domain Description: LptD Location: 1 62378-1 64943 bp Feature: gene Location: 165090-166802 bp Ori: KXD85365.1 Feature: domain Description: RVT_N Location: 165147-165390 bp Feature: domain Description: RVT_N Location: 1 651 47-1 65390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 165435-166071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 65435-1 66071 bp Feature: domain Description: YkfC Location: 166278-166431 bp Feature: domain Description: YkfC Location: 1 66278-1 66431 bp Feature: domain Description: HNH Note: nucleases Location: 166608-166746 bp Feature: domain Description: HNH Note: nucleases Location: 1 66608-1 66746 bp Feature: gene Location: 168076-169092 bp Ori: KXD85366.1 Feature: domain Description: COG3178 Location: 168079-169078 bp Feature: domain Description: COG31 78 Location: 1 68079-1 69078 bp Feature: gene Location: 169089-169763 bp Ori: KXD85367.1 Feature: domain Description: NTP_transferase_like_1 Location: 169095-169734 bp Feature: domain Description: NTP_transferase_like_1 Location: 1 69095-1 69734 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), zf-C4_Topoisom (pfam01396), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091)
PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)

Seq: LRZF01000033.1 Pseudomonas aeruginosa strain AU16821 NODE_3_length_409442_cov_8.80339_ID_5, whole genome shotgun sequence (409442 bp)
Overview 1 RT 1: 359-6603 bp Neighborhood of RT #1 [359, 6890] RVT-UG5 nitrilase COG4127 restrict_AAA_1 restrict_AAA_1 Feature: gene Location: 359-2839 bp Ori: KXD76662.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 362-791 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 362 -791 bp Feature: domain Description: nitrilase Location: 2150-2735 bp Feature: domain Description: nitrilase Location: 2 150-2 735 bp Feature: gene Location: 3209-4201 bp Ori: KXD76663.1 Feature: domain Description: COG4127 Location: 3215-4190 bp Feature: domain Description: COG412 7 Location: 32 15-4190 bp Feature: gene Location: 5139-6890 bp Ori: KXD76664.1 Feature: domain Description: restrict_AAA_1 Location: 5142-5889 bp Feature: domain Description: restrict_AAA_1 Location: 5142 -5889 bp Feature: domain Description: restrict_AAA_1 Location: 6216-6603 bp Feature: domain Description: restrict_AAA_1 Location: 62 16-6603 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5, nitrilase (cl11424), COG4127 (Predicted restriction endonuclease, Mrr-cat superfamily ), restrict_AAA_1 (TIGR04435)