myRT

myRT report for GCA_001555135.1_ASM155513v1

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Seq: LRYU01000031.1 Pseudomonas aeruginosa strain AU7032 NODE_7_length_378754_cov_7.41676_ID_13, whole genome shotgun sequence (378754 bp)
Overview 1 RT 1: 291869-302169 bp 2 RT 2: 318437-327269 bp Neighborhood of RT #1 [291869, 302177] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [318437, 327298] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 291869-292990 bp Feature: domain Description: COG3177 Location: 291887-292979 bp Feature: domain Description: COG31 77 Location: 291 887-292979 bp Feature: gene Location: 293249-293386 bp Feature: gene Location: 293714-295399 bp Feature: RT Description: RVT_N Location: 293771-294011 bp Feature: RT Description: RVT_N Location: 293771 -29401 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 294059-294695 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 294059-294695 bp Feature: domain Description: GIIM Note: maturase Location: 294749-294980 bp Feature: domain Description: GIIM Note: maturase Location: 294749-294980 bp Feature: domain Description: HNH Note: nucleases Location: 295232-295370 bp Feature: domain Description: HNH Note: nucleases Location: 295232-295370 bp Feature: gene Location: 296480-300217 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 296588-297245 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 296588-297245 bp Feature: domain Description: PRK09776 Location: 297458-297929 bp Feature: domain Description: PRK09776 Location: 297458-297929 bp Feature: domain Description: PAS Location: 297986-298511 bp Feature: domain Description: PAS Location: 297986-29851 1 bp Feature: domain Description: PRK10060 Location: 298520-300167 bp Feature: domain Description: PRK1 0060 Location: 298520-3001 67 bp Feature: gene Location: 300324-302177 bp Feature: domain Description: PRK05658 Location: 300336-302169 bp Feature: domain Description: PRK05658 Location: 300336-3021 69 bp Feature: gene Location: 318437-319729 bp Feature: domain Description: PRK10770 Location: 318527-319721 bp Feature: domain Description: PRK1 0770 Location: 31 8527-31 9721 bp Feature: gene Location: 319710-322493 bp Feature: domain Description: LptD Location: 319905-322479 bp Feature: domain Description: LptD Location: 31 9905-322479 bp Feature: gene Location: 322626-324338 bp Feature: RT Description: RVT_N Location: 322683-322926 bp Feature: RT Description: RVT_N Location: 322683-322926 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 322971-323607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 322971 -323607 bp Feature: domain Description: YkfC Location: 323814-323967 bp Feature: domain Description: YkfC Location: 32381 4-323967 bp Feature: domain Description: HNH Note: nucleases Location: 324144-324282 bp Feature: domain Description: HNH Note: nucleases Location: 3241 44-324282 bp Feature: gene Location: 325611-326627 bp Feature: domain Description: COG3178 Location: 325614-326613 bp Feature: domain Description: COG31 78 Location: 32561 4-32661 3 bp Feature: gene Location: 326624-327298 bp Feature: domain Description: NTP_transferase_like_1 Location: 326630-327269 bp Feature: domain Description: NTP_transferase_like_1 Location: 326630-327269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)