myRT

myRT report for GCA_001555165.1_ASM155516v1

Download annotations/find similar RTs

Seq: LRYM01000042.1 Pseudomonas aeruginosa strain AU9739 NODE_4_length_377531_cov_6.29058_ID_7, whole genome shotgun sequence (377531 bp)
Overview 1 RT 1: 292480-302786 bp 2 RT 2: 319046-327884 bp Neighborhood of RT #1 [292480, 302788] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [319046, 327913] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 292480-293601 bp Feature: domain Description: COG3177 Location: 292498-293590 bp Feature: domain Description: COG31 77 Location: 292498-293590 bp Feature: gene Location: 293860-293997 bp Feature: gene Location: 294325-296010 bp Feature: RT Description: RVT_N Location: 294382-294622 bp Feature: RT Description: RVT_N Location: 294382-294622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 294670-295306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 294670-295306 bp Feature: domain Description: GIIM Note: maturase Location: 295360-295591 bp Feature: domain Description: GIIM Note: maturase Location: 295360-295591 bp Feature: domain Description: HNH Note: nucleases Location: 295843-295981 bp Feature: domain Description: HNH Note: nucleases Location: 295843-295981 bp Feature: gene Location: 297091-300828 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 297199-297856 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 2971 99-297856 bp Feature: domain Description: PRK09776 Location: 298069-298540 bp Feature: domain Description: PRK09776 Location: 298069-298540 bp Feature: domain Description: PAS Location: 298597-299122 bp Feature: domain Description: PAS Location: 298597-2991 22 bp Feature: domain Description: PRK10060 Location: 299131-300778 bp Feature: domain Description: PRK1 0060 Location: 2991 31 -300778 bp Feature: gene Location: 300935-302788 bp Feature: domain Description: PRK05658 Location: 300947-302786 bp Feature: domain Description: PRK05658 Location: 300947-302786 bp Feature: gene Location: 319046-320338 bp Feature: domain Description: PRK10770 Location: 319136-320330 bp Feature: domain Description: PRK1 0770 Location: 31 91 36-320330 bp Feature: gene Location: 320319-323108 bp Feature: domain Description: LptD Location: 320514-323094 bp Feature: domain Description: LptD Location: 32051 4-323094 bp Feature: gene Location: 323241-324953 bp Feature: RT Description: RVT_N Location: 323298-323541 bp Feature: RT Description: RVT_N Location: 323298-323541 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 323586-324222 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 323586-324222 bp Feature: domain Description: YkfC Location: 324429-324582 bp Feature: domain Description: YkfC Location: 324429-324582 bp Feature: domain Description: HNH Note: nucleases Location: 324759-324897 bp Feature: domain Description: HNH Note: nucleases Location: 324759-324897 bp Feature: gene Location: 326226-327242 bp Feature: domain Description: COG3178 Location: 326229-327228 bp Feature: domain Description: COG31 78 Location: 326229-327228 bp Feature: gene Location: 327239-327913 bp Feature: domain Description: NTP_transferase_like_1 Location: 327245-327884 bp Feature: domain Description: NTP_transferase_like_1 Location: 327245-327884 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)